LOCUS AK106495 2033 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-105-D02, full insert
sequence.
ACCESSION AK106495
VERSION AK106495.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2033)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2033
/clone="002-105-D02"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2033
/db_xref="Osa1:LOC_Os03g57660"
/db_xref="Osa1:LOC_Os03g57670"
/note="(Rice Genome Annotation Project) LOB domain
protein 25, putative"
/note="(Rice Genome Annotation Project) glutamate
carboxypeptidase 2, putative, expressed"
/note="mapping to R03-TIGRv4S1-001597F (Chr.3: short
arm=32801770, long arm=32805460, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 558 a 441 c 432 g 602 t
ORIGIN
1 cagcaatgat tagttggcat gaacagctaa ttttgtaaca tctggaatga ctcccactca
61 tttttgtgtc aagcccacgt cataattact ccaagcactc caaatgatgg cttccataaa
121 taccatggaa agctccaaac cttacaaaat gtcatttgct ttccacgaca atcagattta
181 ccatttaagg gcgatacctt tatgtagaaa aaatttccgt tctgttgaag ttgacatggc
241 tgtaccagtt gaaggtgcat gtgaaagtca gctgtatcgg ttgcagagaa taatcgctac
301 tcggttgtct ccatcaagtt gagcatgcaa ggtctggatc ccacatgcaa tcttagtgct
361 agtcaaaatt cacactttct acatagaatt gtggaataag ataataacca aattgtgtcg
421 atggatattc cagttccaat aaattaggct acaaactacc tgtacctggt tatacatttt
481 ttgtgttgca tactgttaca tattaagaat atgcagtccg ggtttatcac tggactaact
541 ttggtcaagg agcatcaagg tgtgatgcat cacccagttg ctcactcaac aactgtctca
601 agtcccactg tccctttgaa actcttgttt ccgaccatgc aattagatgc cttggcccat
661 tgcttctcaa ggcctcaacc acatactaag tgctatacaa cttggtccct accatgttaa
721 cccagccagg acgtctgaaa taattgtcct aactggcgcg gggaaaacct cacctatatc
781 aggcacatgt atgtcccact ttcccatgcc tatttaccag cgggtgcaca aatacaatgt
841 agattgatga ggtacctatg atgtgtatga ttaaaatcat gtgtatgtgt gaagtgtaga
901 actgtaaatt aggcaactaa tttccacagc cagttcacgt gtccatgaca ctccatctgt
961 cttgttccct gtcttcaatg aacaaactgc ttattgtggt cctccttgct gtagtacctt
1021 ccatcacctc acttgtgtgc ctgaagggtg agtttctggc gcaggaggcc aagcattctg
1081 ccagacgccc gaggagccat tccatctact tcactctgat tttgtctaaa cttttttatt
1141 gtgctgtaaa ttaattacta tcgcttgcta ccgtaagtga aaaaaaattc tggttatgat
1201 cttttgagcg tctaactcat atatatgttc tgattattta ctgacaatga attcgcagat
1261 agagagactt gccagaactg attctgactt tgctccattt ctacatcatg ctgggatccc
1321 ctgtatggat ttatactatg gaaaagaatt tcctggatat catacggctc ttgactcgta
1381 tcattggatg gaaaagcatg gtgatccact gtttcttcgt cacgtggcta ttgtggagat
1441 ttggggacta ctggcccttc gattagcaga tgaccctgtg ctgccttttg attatcaaac
1501 atacgcttcc cagttgcagg agcatgcaaa tgcattctct agtatgatgg aaaatagcaa
1561 atgggttcat ttgctgaata gatccattga agatctttct gatgcaggct tagaatttct
1621 gaaagaggca aagaaattac aggaccaaaa tatatccgat gggtactctc tgatgaggcg
1681 gcgattgttg aacgaccgtc ttctacttgc tgaaagaagc tttctgcaag ctgatggact
1741 tcagggaaga ggatggttca agcatctgat gtactcgcct ccggaggact acgaaagcaa
1801 gctctcgttt ttccctgggg tggcggacgc catctcccgg tcgagcaatc gaagcgcgaa
1861 agaacagcag gcggcggtgc ggcatgaggt gcggaaaatc tctagggcaa tccaaagagc
1921 agctgatgtt cttagaggcg aattcagtaa taggaacgaa tctttatact ctagcctttc
1981 tgtggctcca taaaaactgt gtataaataa aatcgattgg ggtttgagaa atg
//