LOCUS AK106489 1562 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-105-A03, full insert
sequence.
ACCESSION AK106489
VERSION AK106489.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1562)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1562
/clone="002-105-A03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1562
/db_xref="Osa1:LOC_Os06g16250"
/db_xref="RAP-DB:Os06g0273700"
/note="(RAP Annotation release2) Protein of unknown
function DUF231, plant domain containing protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R06-TIGRv4S1-000418F (Chr.6: short
arm=9252960, long arm=9254522, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 221 a 516 c 565 g 260 t
ORIGIN
1 gtgtcagtgg agctcgatcg atcggcgacc tcccactact tacacggcga catggcgacg
61 ccaccggcga ggcctcgtcg gtaaccgtca tgaagcgcct ctccatccgc ggcctcctcg
121 ccggggctcg ccggacccgc cacgccgttg ccgccaaggc caccgcgtcc gtcccggctc
181 tcgtcgcgct cctcttcttc ttcgccgccg ccaccttctc ggtcttctcc ctcggctcct
241 tccgttggcc tggcgccgcc gatgatggcg gtgcggctgc ctgcgacgcc gcgctggcgc
301 gggggcgggg cgagtggatg cgcgacgccg gcgcggcgcc gtactacacc aacgcgacgt
361 gcgggttcat ccagaactac cagaactgca tgaagcacgg gaggcccagc atggagttct
421 tgcggtggcg gtggcgtccc ggtgacggcg gcgaggggtg cgagccgctc gggccgttcg
481 acgcggcgcg gttcttccgg ctcgtgcgcg ggaggtcgat gctgttcgtc ggcgactcgc
541 tggcgagcag ccacgtgacg tccctcgtgt gcgcgctgtc gcaggtggag gcgccggcga
601 ggtcgcgcga cgcggcggcg gggttcgagc actggcgctt cccggcgcac ggcttcgccg
661 tcgcctactt ctggacgccg ttccaggtcc ggtggcgcct gacgcgcggc ccgccggagg
721 cggtcggtcc ggaacggcag ggcgaggtgt tcgccggccc gagcgacctc cacctcgacg
781 agcccgacga gcggtggacg tccgccgcca agagccacga ctacgtcgtc ctctccgcgt
841 cgcactggtt cgcgcgcccc gccgtgtact accagcacgg ccgcgtcgtc ggctgccacg
901 actgcggcga cagcaacgcc accgccacgg ccattgtcaa gcagccagag cacgcgcagc
961 gggcggcgtt ccgcgccgtg ctcggggcgc tggcgcggct ggacgggttc aacggcacgg
1021 cgatcctgcg cacggtggcg ccgacgcact acgagaacgg cgggtggttc gacggcgggg
1081 agtgcaccgc gacgcggccg gccagcgaga gcgaggacgg ggcggcgccg gagatggcgg
1141 cgacggaggc ggagttctac cgggcgcagg tcgaggagtt cgccgcggcg gcggcggcgg
1201 cggcggcgag gaacggcggc aagcgggcgc ggctgaggct gatggacgtg acgcggatga
1261 tgctgctccg gccggacggg cacccggacc ggcacgggca tggcggcggc gagcacgacg
1321 gattcgagat cgactgcctg cactggtgct tgcccggagc gatcgacgtg tggaacgacc
1381 tgctgcttca gataatcgca tcctcatgac aacgctacct gacgtgacac tcagcaaagc
1441 acagacaaat atggagcaat gtagatgaaa atttcccttg gatttgcttt tttttttttt
1501 tttttttttg gctttgcctc gttgagttgc ggaatcagat gcttagatat attgatctga
1561 gt
//