LOCUS AK106451 1540 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:002-103-F01, full insert
sequence.
ACCESSION AK106451
VERSION AK106451.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1540)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1540
/clone="002-103-F01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1540
/db_xref="Osa1:LOC_Os02g14770"
/note="(Rice Genome Annotation Project)
phosphoenolpyruvate carboxylase 1, putative, expressed"
/note="mapping to R02-TIGRv4S1-000442R (Chr.2: short
arm=8177821, long arm=8184160, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 355 a 427 c 430 g 328 t
ORIGIN
1 acacccacac tctctacccc caaacttgcc ctccaatcta tctccgccgc cgccgccgcc
61 tccgccgcga gagggcgtcg ccgagctgcg cgggaggctc gcctcccgca gcatctggcc
121 ggattcgtcg tagtcgaggc agctgtaagc gagagagagg gagatggccg cggccgccgg
181 gaaggcggcg atggagcggc accagtcgat cgacgcgcag ctgcggctgc tcgcgccggg
241 gaaggtatcc gaggacgaca agctcgtcga gtacgacgcc ctcctcgtcg accgcttcct
301 cgacatcctc caggacctgc acggccctca cctccgcgaa ttcgtgcagg agtgctacga
361 gctgtcggcg gagtacgaga acgacaggga cgaggcgcgg ctcgacgagc tggggaggaa
421 gctcaccagc ctgtcgccgg gggactccat cgtcgtctcc agctccttct cgcacatgct
481 caacctcgcc aacctcgccg aggaggtgca gatcgcgcac cgccgccgga tcaagctcaa
541 gcgcggggac ttcgccgacg aggcctccgc gcccaccgag tccgacatcg aggagacgct
601 caagcgcctc gtcacccagc tcggcaagtc gagggaggag gtgttcgatg cgctcaagaa
661 ccagaccgtt gacctcgtgt tcaccgcgca tccaacgcag tccgtcagga ggtccctgct
721 ccagaagcac gggaggatcc ggaattgcct gaggcagtta tatgcgaaag acatcactgc
781 tgatgacaag caggagcttg atgaggccct gcagagggag attcaagcag ctttcagaac
841 tgatgaaatc cgcaggactc ctcccactcc tcaggatgaa atgcgcgccg ggatgagtta
901 ttttcatgaa actatatgga agggtgtacc aaagttcttg cgccgcattg atactgctct
961 gaaaaatatt gggattaatg agcgtcttcc ttacaatgct cctctcatcc agttctcatc
1021 ctggatgggt ggtgaccgtg atggaaaccc aagagttaca ccagaggtta caagagatgt
1081 atgcttgttg gcaagaatga tggctgctaa cctgtacttc tctcagatag aagatctgat
1141 gtttgagctc tctatgtggc gctgcagtga tgaacttcga attctgcaga tgatttgcat
1201 tgctcctcca gaaaagctgc aaagcactat atagaattct ggaagcaaat tcctccaaat
1261 gagccttatc gtgtcatact tggtggtgtc agggataaat tgtactatac gcgtgaacgt
1321 actcgccatc tattgacaac tggagtttct gaaattccag aggaggcaac gtttactaat
1381 gttgaagagt ttctggagcc gcttgagctg tgctacagat cattatgtgc ttgtggtgac
1441 aaacctatag ctgatggaag ccttcttgat gtaaatgtca aggggggact tatttggctt
1501 ttgcagcccg atccaaaata aaatatggac caatcattct
//