LOCUS       AK106405                1649 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:002-102-H01, full insert
            sequence.
ACCESSION   AK106405
VERSION     AK106405.1
KEYWORDS    oligo capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1649)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1649
                     /clone="002-102-H01"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..1649
                     /db_xref="Osa1:LOC_Os03g54770"
                     /db_xref="RAP-DB:Os03g0754900"
                     /note="(RAP Annotation release2) Similar to Cleavage
                     stimulation factor 50K chain (Cleavage stimulation factor
                     50)"
                     /note="(Rice Genome Annotation Project) cleavage
                     stimulation factor, 50 kDa subunit, putative, expressed"
                     /note="mapping to R03-TIGRv4S1-001485F (Chr.3: short
                     arm=31073416, long arm=31078632, direction=forward) for
                     TIGR Pseudomol ver4"
BASE COUNT          412 a          416 c          426 g          395 t
ORIGIN      
        1 agtccagacc agttcctagc tccgaacaga gtccttctcc gaagtgcgaa ctcgctgcaa
       61 gccgaatccg ccgcgccgcc acacggagac gagagggaga ggtcgagagg gagagggcga
      121 gggcgagatg gacgcggcgg tgcaggaggc gaagctgctg cgccaggtga acgccctcat
      181 cgtggcgcac ctccgcgacc acaacctcac gcaggctgcc gccgccgtcg ccgccgccac
      241 catgacgccc ctcgccccgc ccgagcccga cggcgacgac tccgtccccg ccaaccagct
      301 cctccgcctc gtcgccaagg gcctcgcggt ggagcgggag gagacgggga ggggaggagg
      361 ggcgttcgac tctgctgccg ccgccgctgg atacggtgga ttgttgccgc cgctcggcac
      421 caatgccgtg gatttcagca cgcaggatgt taagggctca tccaagagct tccccaagca
      481 cgaggccagg cacgtatctg atcacaagaa tgttgtccga tgtgcaaaat ttagtcctga
      541 tgggaaatat tttgcatccg ggagtggtga cacatcaatt aagttcttcg aggttgctaa
      601 aataaagcag atgatgctag gggattccaa agatggccct gtccgtcctg tgatccgtac
      661 tttttacgat cacacgcagc ccatcaatga tcttgatttt catcctgaga gccccatact
      721 gatatctgca gcaaaagaca atacagtaag gttcttcgac ttctcaaaaa ctgttgcaag
      781 gaaagcattc agagttattc aggacactca caatgttaga tccgtatgtt ttcatccttg
      841 tggggattac cttttagcag ggactgatca cccagtggct catctatatg atattaacac
      901 tttcacatgc tacttatcgg caaattcaca tgattccaat gctgccatta atcaggtccg
      961 atactcttct actgggagcc tgtatgtgac tgcttccaag gatggttctc tgcgcatctg
     1021 ggatgggata tccgctgaat gtgtccggcc cataattgga gcacatgcat ctgcagaggt
     1081 tactagtgca attttcacaa aagatgagag gtatgtccta tcatgtggga aggattcttg
     1141 tataaaatta tgggaagttg gctctggacg acttgtcaag caatatgtag gcgctgttca
     1201 cagacaattt cgatgtcagg ctgtcttcaa ccaaacggag gaatttgtag tatcaaccga
     1261 tgaacaaaac agtgaggttg tcgtctggga tgcacttacc gctgaaaatg tagcaaggtt
     1321 gccctctggc cacaccggtg ccccgaggtg gcttggccac tcccctgcag aaccagcctt
     1381 tgttacatgc ggtaacgata gatccgtcag attctggaaa caaaccgtgt agaaaatgta
     1441 gatccaccaa cgaatcaacc cagaagttgg tggtagaatt aactaataca ttgagattaa
     1501 aaaaccttgt tcatgtgctg ttccttaatt atttgattag ttgtacactt gtacatgcta
     1561 ctgaagttgt acactgatga tactgtaccc aacttggtag gaaaattttg gctcttgttg
     1621 gcattcatgt aagcagaatt cagaacttg
//