LOCUS AK106163 1193 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-208-B04, full insert sequence. ACCESSION AK106163 VERSION AK106163.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1193) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1193 /clone="001-208-B04" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 65..1054 /db_xref="Osa1:LOC_Os03g08500" /note="(Rice Genome Annotation Project) ethylene-responsive element binding protein 2, putative, expressed" /note="mapping to R03-TIGRv4S1-000261R (Chr.3: short arm=4351385, long arm=4352577, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG97612.1" /translation="MCGGAILAELIPSAPAARRVTAGHVWPGDANKAKKKGARADDFE AAFRDFDNDSDDEEMMVEEAEEEEATSEHKPFVFRAKKAAAAASSRRRKPAQYRGVRR RPWGKWAAEIRDPVKGIRVWLGTFTNAEAAALAYDDAARAIRGDRAKLNFPSATTPDT RKRGRATAAAAPAVKATPVINLVEEEDEEEVAAAMASIKYEPETSESSESNALPDFSW QGMSASDEFAVAAAALSLDSDDDLAKKRPRTEPEDTTDSGSGDDTDALFDALLFADQY NHFNGGAYESLDSLFSADAVQTTAAAAAADQGMGLWSFDDGCCLVDVEASLSF" BASE COUNT 228 a 416 c 386 g 163 t ORIGIN 1 atcatcacaa gctcacaagt tcacaaccca acacccaaaa gcaaaagaaa agcagcaacc 61 aaagatgtgc ggcggagcga tccttgcgga gctcataccg agcgcgccgg cggcgaggcg 121 cgtcacggcg ggccacgtct ggccgggcga cgccaacaag gccaagaaga agggcgcgcg 181 cgccgacgac ttcgaggccg cgttccgcga cttcgacaac gactccgatg acgaggagat 241 gatggtggag gaggcggagg aggaggaggc gacctccgag cacaagccgt tcgtcttccg 301 cgccaagaag gcggcggcgg cggcgtcgag caggcgcagg aagccggcgc agtacagggg 361 cgtgcggcgc cggccgtggg ggaagtgggc ggcggagatc cgcgaccccg tcaagggcat 421 ccgcgtctgg ctcggcacct tcaccaacgc cgaggccgcc gcgctcgcct acgacgacgc 481 cgcgcgcgcc atccgcgggg acagggccaa gctcaacttc ccttccgcta ccacccctga 541 cacccgcaag cgcggccgcg ccaccgccgc cgccgccccg gccgtcaagg cgaccccggt 601 catcaacctc gtcgaggagg aggacgagga ggaggtcgcc gccgccatgg cgtccatcaa 661 gtacgagccc gagaccagcg agagctccga gtcgaacgcc ctcccggact tctcctggca 721 gggcatgtcg gcctccgacg agttcgccgt cgccgcggcg gcgctgtcgc tcgacagcga 781 cgacgacctc gccaagaagc gtccgaggac cgagccggag gacaccaccg actccggctc 841 cggcgacgac accgacgcgc tgttcgacgc gctgctgttc gccgaccagt acaaccactt 901 caacggcggc gcctacgagt ccctggacag cctgttcagc gccgacgccg tgcagaccac 961 cgccgccgcc gccgccgccg accagggcat ggggctctgg agcttcgacg acggctgctg 1021 cctcgtcgac gtcgaggcca gcttgtcctt ctaggctcta gccgtcgtct ccggcgaccc 1081 tgtgactcga tcttgtacca tgtcatgtac atagaagagt ggttttgcca agcaagcatg 1141 tgttcgtcct ggttcctttc ggtaatgaaa aattatgtga ggcttctcgt tct //