LOCUS AK106098 1333 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-207-C03, full insert
sequence.
ACCESSION AK106098
VERSION AK106098.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1333)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1333
/clone="001-207-C03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 246..1178
/db_xref="Osa1:LOC_Os01g42830"
/note="(Rice Genome Annotation Project) adaptin
ear-binding coat-associated protein 1, putative,
expressed"
/note="mapping to R01-TIGRv4S1-001007F (Chr.1: short
arm=24702724, long arm=24706748, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG97568.1"
/translation="MSSTGEQSQAKAEAEEAVELVLFQVAECYVYLIPPRKTAASYRA
DEWNVNKWAWEGTLKVVSKGEECIIKLEDKNTGELYARAFLREDEPHPVEPVIDSSRY
FVLRVEENIDGRQRHAFIGLGFRERPQAYDFQAALHDHMKYLNKKKTAEEMVQHYEKS
SSVDYSLKEGETLVLQLKNKESGAKIKSAFFEQGLNKLSFNEKANSKEAPVSLKLPPP
PPSPVSPTDSGIAASPFKAEFPSQDQPAADTGADTTPFKAEFPSSHEQPAADNVASSP
PPKAEAAPQEQPTAAEKAPQESVDDDFGDFQAAG"
BASE COUNT 336 a 399 c 294 g 304 t
ORIGIN
1 acgcaaacct ctcccctctt cggcacttcc cttccccacc ttcctcctct cccaccgctc
61 tctctctctc tctctctctc tctctctcag tctctctccc ccccaagaag aaatccattc
121 ctctctcacg cgcctccgcg tcgccgcatt cggggacgcc caccgccgcc ggatccggcc
181 agccttcccc cctcccctcc tttccccggc cgctcccctc ctcggtaaga tccggcgccg
241 gttccatgtc gagcaccggc gagcagtcgc aggcgaaggc ggaggccgag gaggcggtgg
301 agctcgtgct gttccaggtc gctgagtgct acgtctacct gatacctccc aggaagacag
361 ccgcctccta cagggctgat gaatggaacg tcaacaagtg ggcttgggaa gggactctca
421 aggttgtcag caaaggagaa gagtgcatca tcaaactgga agataagaac acaggggagc
481 tgtacgctag ggcattcctc agagaagacg aaccacatcc ggtggaacct gttattgata
541 gcagcagata ttttgtactc cgtgttgaag agaatataga tggacgtcag cgccatgcct
601 ttattggttt aggcttccgt gaaagacctc aagcatatga tttccaagct gctctgcacg
661 accatatgaa atatctaaac aagaaaaaga ctgctgaaga gatggtacaa cactatgaga
721 aatcatcatc agtggattac agcctcaaag aaggggaaac tttggttttg cagctaaaaa
781 ataaagagtc cggcgcaaag ataaaatctg cattttttga gcaaggcctc aacaagctct
841 catttaacga aaaagccaac tccaaggagg ccccagtttc cctcaagctc cctccacctc
901 cgccatcacc ggtctctcct acagattctg gcatcgcggc ttctccgttc aaagcggagt
961 ttccttccca agaccaacca gctgctgata ctggagctga taccactcct ttcaaagcag
1021 aatttccttc ttctcatgaa caaccagccg cggataacgt cgcttcttcc ccaccaccga
1081 aagcagaagc tgctcctcag gagcaaccaa ctgcagcaga gaaggcccct caagagagcg
1141 tggacgacga cttcggagac tttcaggcag ctgggtgaat catgtatctt gtacatacca
1201 catgttactc aaattgctcc tttgattttc catgttccat cagttgtgac ttctgccggc
1261 acatgagttg ctgtacagta cagagagcta gtaactatct tgttataatc tataaaagaa
1321 cagatggata cac
//