LOCUS AK106070 1731 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-206-H06, full insert
sequence.
ACCESSION AK106070
VERSION AK106070.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1731)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1731
/clone="001-206-H06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1731
/db_xref="Osa1:LOC_Os06g19800"
/db_xref="RAP-DB:Os06g0302000"
/note="(RAP Annotation release2) BURP domain containing
protein"
/note="(Rice Genome Annotation Project) BURP domain
containing protein, expressed"
/note="mapping to R06-TIGRv4S1-000467F (Chr.6: short
arm=11313276, long arm=11317489, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 439 a 457 c 497 g 338 t
ORIGIN
1 atgaatatga aaagtctgta cacatagaca aagaggacct caaagaagtc tcagtgtcat
61 atggctcaaa tgtgaaacta agcaatttgt tcccaacagg gtatgcacat cagaaatata
121 tattaacaag cggagctgga ctaaaggaag tctccgtgac atatggaagt gatggtgaag
181 aggagccaag gaaaacattc tctaaagtag ggtatatgtt agataaggaa tgcaagaagt
241 cttcagatgt agacgaaggg ggactaaagg aagtctcggt gtcatatgga agtaatggtg
301 aagaggagac cagcaaaacc actcctatgg gaggatacat ggtagatatg aaaaacgaaa
361 agtctctgca agcagagaaa gatggactaa aggaagtctc ggtgtcatat ggaagtaatg
421 gtgaagagga tacaagcaaa acctttgcta tgggaggata catggttgat aacgaacgtg
481 aaatgtctct acaaggacag aaagtaatga tgaagaggag acaagaaaaa tcattcctat
541 gaaaggatac atggaagaca gggaacacga aaagtcccta caagcggaga aagaggaact
601 caaagaagtt tcagtgtcat atggccatga agtaaaacta agcaatttgt tccctacgag
661 attcggacat aagaattatc aacacacatt cgaaggaatg gatcatggac gccatgttca
721 cgcacacggc aacaagatgc agcaactggc cgacgtcttc ttcttccgcg acgccctccg
781 gccgggctcc gtcatcacgc cgaccatccc gccgacgacc tcgctgccgg ccttcctccc
841 tcgccacgtc gccgacgcca tcccgttctc cgccgaccgc tttgccgacg tcctcgccat
901 gttcgcgccg gcgtccctcg ccatggcgcg cgagatacgg tgggcgctcg acacctgcgg
961 ccagcgggcg gcggcgctgc tcccgggcga gaaggccggc tgcgccacct ccctcgagtc
1021 gctcgccgac ctcgccgcgt cgctcctcgg gacgcgcgac gtccgcgcgt tctccgccgc
1081 cgaccttccc accgacgccg cgaccacgcc ggcgcggcgc gggaggtaca acgtgacgtc
1141 cgtgcgggag ctctcggcga tggctggttc cggttcgtcg tcgtcgtcgg agccggcgcc
1201 ggctgccgtc gtggcgtgcc acgacctgac gtacccgtac gccgtgttct actgccacag
1261 taccaagccg accgccgcgt acgcggtgac gctggtggcg gcgaccaccg gggacggcga
1321 cggcgaaggc gaggcggcct cgccggcgaa gatggaggcg ctcgccgtgt gccacctgga
1381 cacgtcgcgg tggagggcgg acaacccgtt cttcgtggcg cacggcgtca agccggggga
1441 ggtgtccgtg tgccacttcc tcaccaagct cagcatcgtc tgggtcccac gccacgagca
1501 ggggggccca cgcgcagcag cttaatcatc atcgatgatg taaacaagct ctacaaccta
1561 aagtgaacaa tttggcgtgg tttgtgcgta atttgcagca acggtcgatc gagctatcta
1621 cttatatagt atgtaaaaag tgaataattc agtttgtcat cgtgtgaacc acatgtgtgc
1681 tgcatatttg tgcgtgtgca tgttcataat taatatggat attgtgtctt c
//