LOCUS AK105913 1657 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-204-H06, full insert
sequence.
ACCESSION AK105913
VERSION AK105913.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1657)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1657
/clone="001-204-H06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 43..1542
/db_xref="Osa1:LOC_Os02g36110"
/db_xref="RAP-DB:Os02g0569900"
/note="(RAP Annotation release2) Cytochrome P450 family
protein"
/note="(Rice Genome Annotation Project) cytochrome P450
76C2, putative, expressed"
/note="mapping to R02-TIGRv4S1-000864F (Chr.2: short
arm=21734434, long arm=21736092, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG97435.1"
/translation="MENSQVWLLWGALSVAVLFYLSTLRRRYAGGKPLPPGPTPLPLI
GNLHLAGGTFHHKLRDLARVHGPVMTLKLGLATNVVISSREAAIEAYTKYDRHLAARA
TPDTFRACGFADRSMVFIPSSDPQWKALRGIQGSHVFTPRGLAAVRPIRERKVGDLIA
YLRAHAGEEVLLGQAMYTGLLNLVSFSYFSIDIVDMGSQMARDLREVVDDIISVVGKP
NISDFYPFLRPLDLQGLRRWTTKRFNRVFSIMGDIIDRRLAHIRDGKPRHDDFLDSLL
ELMATGKMERVNVVNMLFEAFVAGVDTMALTLEWVMAELLHNPAIMARVRAELSDVLG
GKEAVEEADAARLPYLQAVLKEAMRLHPVGALLLPHFAAEDGVEIGGYAVPRGSTVLF
NAWAIMRDPAAWERPDEFVPERFLGRSPPLDFRGKDVEFMPFGSGRRLCPGLPLAERV
VPFILASMLHTFEWKLPGGMTAEDVDVSEKFKSANVLAVPLKAVPVLIK"
BASE COUNT 281 a 555 c 527 g 294 t
ORIGIN
1 aggtagaacc agagaaaaag aacattaacg ataagtaaag taatggagaa tagccaggtg
61 tggctgctat ggggagctct ctccgtcgct gtcctcttct acctctccac cctgcgacga
121 cgctacgccg gcggcaaacc cctccccccg ggcccgacgc cactgccgct catcggcaac
181 ctccacctgg ccggcggcac gttccaccac aagctcaggg acctggcgcg cgtccacggc
241 cccgtgatga cgctcaagct cggcctcgcc accaacgtgg tcatctcctc ccgggaggcc
301 gccatcgagg cgtacaccaa gtacgaccgc cacctcgccg cgcgcgccac tccggacacc
361 ttccgcgcgt gcggcttcgc cgaccgctcc atggtgttca tcccgagctc cgacccgcag
421 tggaaggccc tgcgcgggat ccagggctcc cacgtcttca ccccgcgtgg ccttgccgcc
481 gtgcgcccca tccgtgagcg gaaggtgggc gacctcatcg cctacctccg cgcgcacgcc
541 ggcgaggagg tgctcctcgg ccaggccatg tacactggcc tcctcaacct cgtgtccttc
601 tcctacttct ccatcgacat cgtcgacatg ggctcgcaga tggcccgcga cctgcgggag
661 gtggtggacg acatcatctc ggtggtcggg aagcccaaca tctccgactt ctacccgttc
721 ctccggccgc tggacctgca gggcctgcgc cgctggacga cgaagcggtt caacagggtg
781 ttctccatca tgggcgacat catcgaccgc cgcctggctc acatccgcga cggcaagccg
841 aggcacgacg acttcctcga ctcgctcctc gagctcatgg ccaccggcaa gatggagcgt
901 gtcaacgtgg tgaacatgct gttcgaggcc ttcgtcgccg gcgtggacac catggccctc
961 accctggagt gggtgatggc cgagctgctc cacaacccgg ccatcatggc gagggtgcgc
1021 gcggagctga gcgacgtgct cggcgggaag gaggccgtgg aggaggccga cgcggcgagg
1081 ctgccctacc tccaggccgt gctgaaggag gccatgaggc tgcacccggt gggcgcgctg
1141 ctgctgccgc acttcgccgc ggaggacggc gtggagatcg gcggctacgc ggtgccgagg
1201 ggctccacgg tgctcttcaa cgcgtgggcg atcatgcgcg acccggcggc gtgggagagg
1261 cccgacgagt tcgtgccgga gcgcttcctg gggaggtcac ccccgctgga cttcaggggg
1321 aaggacgtgg agttcatgcc gttcgggtcc gggaggcggc tgtgccccgg gctgccgctg
1381 gcggagcgcg tcgtgccgtt catcctggcg tcgatgctgc acacgttcga gtggaagctc
1441 cccggcggca tgacggcgga ggacgtggac gtgtccgaga agttcaagtc tgccaatgtg
1501 cttgccgtgc ctctcaaggc cgtgcctgtc ctgatcaaat agtcggacgt acgactatat
1561 tgttagccag gtcattaatt gttccagagt actttggttt cactatatat atacgggacc
1621 cagtggcacg agaataatat gcatatgcat atatatg
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