LOCUS AK105855 1495 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-203-H05, full insert
sequence.
ACCESSION AK105855
VERSION AK105855.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1495)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1495
/clone="001-203-H05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1495
/db_xref="Osa1:LOC_Os06g34040"
/db_xref="RAP-DB:Os06g0531200"
/note="(RAP Annotation release2) DJ-1 family protein"
/note="(Rice Genome Annotation Project)
4-methyl-5-thiazole monophosphate biosynthesis protein,
putative, expressed"
/note="mapping to R06-TIGRv4S1-000732R (Chr.6: short
arm=19823560, long arm=19828596, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 355 a 384 c 392 g 364 t
ORIGIN
1 actcttcttc ctcccctccg cttctgctcc cctctcaaaa ccccacctcc ctctcctcct
61 cctcctcacc tccgccgcct ccaaacccta acccgcgcgc tcgcctcctc ctcctcagcc
121 atggcgtcgc cgcccgcgaa gaaggtgctg gtgccgatcg cgagcgggac ggagccgatg
181 gaggccgtca tcaccgtcga cgtgctccgc cgcgccgggg ccgacgtctc cgtcgcctcc
241 gtcgaccccg gctccgcgca ggtcggcgga gcctggggcg tcaagctggc cgcggacgcg
301 ctgctcgacg acctcgccga cgccgaattc gacctcatct cgctcccggg aggtatgcca
361 gggtcttcca atcttagaga ctgcaaactt ctggagaaca tggttaaaaa gcacgcagga
421 aagggcaaac tttatgctgc aatatgtgct gcaccagctg tcgctctagg atcatggggt
481 ttgctgaatg gattgaaggc aacttgttat ccttcattca tggataaact tccttcagag
541 gtcaatgctg tagaatcgag ggtgcagatt gatgggaact gtgtgaccag tcgaggacca
601 ggaacggcca tggagtattc tgttgttttg gtcgaacaat tatatggcaa agaaaaagct
661 gatgaagttg ctggtccaat ggtcatgcgc ccccagcatg gtgtggagtt ctcattgaaa
721 gagttgaatt caactagttg gaatgttggt gaaacacctc agattcttgt accaattgct
781 aatgggacag aggagatgga agcaactatg ataatcgaca tcctcagaag ggcgaaagca
841 aatgttgtcg ttgcgtcctt ggaggaaact ttggagattg ttgcatccag gaaagtgaag
901 atggttgctg atgttctgtt ggatgatgct cttaagcagc aatatgatct cattttgtta
961 ccaggtggtc ttggtggtgc ccaagcatat gcaaagtcag ataaactgat tggtctgatc
1021 aagaagcaag ctgaggcaaa caagctatat ggagctatat gtgcctcgcc agcaatcgcc
1081 cttgaaccac atggcctgct gaagggaaag aaggctacat cctttcctgg tatgtggaac
1141 aagctctcgg accaaagcga atgcaagaac agggttgtcg ttgatggcaa cctaatcacc
1201 agccaaggtc caggcacatc catggagttc tctctcgcca tcgtggagaa gctgtttggt
1261 cgggagaggg ccgtcgagct cgccaaaacc atggtcttca tgtgagttgt gttgttacat
1321 actacgtgta agacaacacc atagtcagac tctgaatatg aggcatcctt ttgctcgtag
1381 ctggtgtggt ggaaagcact tcgtaatcct tttttttggc tttctcttcc acaataacac
1441 gacgtcttgt tatgtgtaca accgtacaaa tgcaataaaa agagatggat attgc
//