LOCUS AK105833 2079 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-203-E09, full insert
sequence.
ACCESSION AK105833
VERSION AK105833.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2079)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2079
/clone="001-203-E09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 645..1649
/db_xref="Osa1:LOC_Os09g35630"
/db_xref="RAP-DB:Os09g0524800"
/note="(RAP Annotation release2) Ubiquitin domain
containing protein"
/note="(Rice Genome Annotation Project) protein binding
protein, putative, expressed"
/note="mapping to R09-TIGRv4S1-000674R (Chr.9: short
arm=20494058, long arm=20496430, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG97389.1"
/translation="MMRAKAKGTFPPAAAAMKESSAPPPPAAAAAAAREDEWEVRPGG
MLVQKRSPDGDAPAAPVPTIRVKVKFNGVYHEIYINSQASFGELKKQLSAPTGLHPED
QKIVYKDKERDSKAFLDMAGVKDRSKMVLLEDPTAQAKRLLEQRRTDKAERAAKSISR
ISLDVDKLATKVTALEAIVGKGGRVVDADVVTLTEALMNELVKLDAIAAEGEVKVQRR
MQEKRVQKYVESLDAIRAKNAASHNKASGNGHAKPRAPHLPPPVSQRRQFQAPPPAAP
TTTKTAAAPAPPPTASWESFDLLSSMPSTSSSTVTTTMAAATTTTTTSPIPRFDWELF
"
BASE COUNT 395 a 675 c 578 g 431 t
ORIGIN
1 gagcgatggt ggaagtggca agttcggccg agacgagacg acacgacggt tgcttccttc
61 ctaaccaact ccccaaccaa gcctccctcc ctcgccggag ctctcgccac cccgcggccg
121 ccgccgccgc cgcgaaacgg agcatttggt taattgcatt gcgtccgcgt tgggtttgcg
181 ttgcatggtc acgcgcgcgc acgcacgcac gcggctttgg gttttttttg gcgcataaat
241 attccgcggc tgctgctgct gctgccgctt cctgcctgtc cctgagttgt acccgctcta
301 tttttttttt ctctctcttt cttctccatc tctcctcctt ccttcctaac ctctccccac
361 ctacctccct gccgcctgat cctgatttcc ccaattgagg ccagcgtcga gcacctgcac
421 acacgcacac gctcgctgct gcgcctcgat tctcgtccca gatccgccac tcccttcccc
481 aattcgccgt cacctgcagc tgagtgttgc ttgctcgagc tagctggtgg ttcttgcctt
541 gcagggcgag gcagtggtag cttgcgagct ttagctgcgg gagcggttgg ctttggtttt
601 ggtttggtaa attggttgcg tgtgcgtgtg cgtgccatga gaagatgatg cgcgccaagg
661 cgaaaggtac attcccaccg gcggcggcgg cgatgaagga gagctctgct cctccgccgc
721 ctgctgctgc ggcggcggcg gcgagggagg atgagtggga ggtgcggcca ggtgggatgc
781 tggtgcagaa gaggagcccg gacggcgacg ccccggccgc gcccgtgccc accatccgcg
841 tcaaggtcaa gttcaacggc gtctaccacg agatctacat caactcgcag gcgtccttcg
901 gtgagctgaa gaagcagctg tcggcgccga cggggctgca cccggaggac cagaagatcg
961 tttacaagga caaggagagg gactccaagg cgttcctcga catggccggc gtcaaggacc
1021 gctccaagat ggtgctcctc gaggacccaa cggcgcaggc caagcgcctc ctcgagcaac
1081 gccgcaccga caaggccgag cgcgccgcca agtccatctc ccgcatcagc ctcgacgtcg
1141 acaagctcgc caccaaggtg acggctctgg aggccatcgt cggcaagggc gggagggtgg
1201 tcgacgccga cgtggtcacg ctcacggagg cgctgatgaa cgagctggtc aagctggacg
1261 ccatcgccgc cgagggcgag gtcaaggtgc agaggcgaat gcaggagaag cgggtgcaga
1321 agtacgtgga gtcgctggac gccatccgcg ccaagaacgc ggcgtcgcac aacaaggcca
1381 gcggcaacgg ccacgccaag ccccgggcgc cgcacctccc gccgccggtg tcgcagcggc
1441 ggcagttcca ggcgccgccg cccgccgcgc caacgacaac gaagaccgcc gccgcgccgg
1501 cgccgccgcc cacggcgagc tgggagtcgt tcgacctgct gtcctcgatg ccgtccacgt
1561 cgtcgtccac cgtgacgacc accatggccg ccgcgacgac caccaccacc acctcgccga
1621 tcccgcggtt cgattgggag ctcttctagc tcgctctcgc tctccctctc ctcctcctcc
1681 gatgggtaca ctactctaca ctacactaca ctacacactt caccttttct ttgtccattc
1741 atctcgtgag ctcattcgat cggtcgcact agcacctgat cgatcagcag cgctcgccat
1801 tgtttctttg atttcttctg ttcattcttc ctcttctttc ttttttcttc atgttccttt
1861 tttcatttcg agagtatatc tacaaaaaca aaaaagaaga aacaccatgg gtgatcgagt
1921 gtgttcagta cgtatgtcat cactcaagtc agttcatcaa tccaatgcat ggtcagtcac
1981 acagccaaaa aagaaaaaag tgggtggtat catgacgaag aattttccgg tgacactata
2041 tatatacaaa aaaaacagca tgtatatgtg attcgaaac
//