LOCUS AK105794 1567 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-202-H11, full insert
sequence.
ACCESSION AK105794
VERSION AK105794.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1567)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1567
/clone="001-202-H11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 238..1416
/db_xref="Osa1:LOC_Os06g47820"
/db_xref="RAP-DB:Os06g0693200"
/note="(RAP Annotation release2) Protein kinase-like
domain containing protein"
/note="(Rice Genome Annotation Project) BRASSINOSTEROID
INSENSITIVE 1-associated receptor kinase 1 precursor,
putative, expressed"
/note="mapping to R06-TIGRv4S1-001000F (Chr.6: short
arm=28940272, long arm=28942704, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG97368.1"
/translation="MRPLYLRSSGSFKKLLLSISHRGAKNGNGDAAAKERYTPAAAAA
APESPRKPAWRCFSYEEIHRATNAFHEGNLVGKGGSSEVYRGELPDGRAVAVKRLMGA
WACERRERDFLAELGTVGHARHPNVCALLGCCVDRDLYLVFHFSGRGSVSANLHDEKK
APAMGWAVRRAIAVGTARGLEYLHKGCQRRIIHRDIKASNVLLTDDFQPQISDFGLAK
WLPSEWTHRAIAPIEGTFGCLAPEYYTHGIVDEKTDVFAFGVFLLEIMTGRKPVDGSH
KSLLSWARPFLNEGRIESLVDPRIGGDYDGEEARRLAFVASLCIRSSAKWRPSMTEVL
ELLEGVEIRQERWTMPEAVEDDDDEELWRFDDLDDEDDEDEEEFNTASPSSCSSSLSN
"
BASE COUNT 295 a 482 c 511 g 279 t
ORIGIN
1 gtgcgtatcc ccgcgaaacg cctcgtcgcg ttcatatttg ctcacggctc gcgcggcact
61 cgcgagagca cctcggcgtt agtacccatc aatgcctccc tcctcctcct cctccgccac
121 caccaccagc tcgccgtctc gtctccctcc tccgcttcgc ctcctctgat cacctcgctc
181 gccggcgacg ccgcgatcgc caccgcaccg cagggcattg tgtcgtcgag gggagagatg
241 aggcctctgt acctgcgcag cagcggcagc ttcaagaagc tgctcctctc catcagccac
301 cgcggcgcca agaacggcaa tggcgacgcc gccgccaagg agagatacac gcccgccgcc
361 gccgcggcgg cgccggagtc gccgcggaag ccggcgtggc ggtgcttctc ctacgaggag
421 atccaccgcg ccacgaacgc gttccacgag ggcaacctgg tggggaaggg cgggtcgtcg
481 gaggtgtacc gcggcgagct ccccgacggg cgggccgtgg cggtgaagcg gctgatgggc
541 gcgtgggcgt gcgagcggcg ggagcgcgac ttcctggcgg agctcggcac ggtggggcac
601 gcgcgccacc ccaacgtgtg cgccctcctc ggctgctgcg tcgaccgcga cctctacctc
661 gtcttccact tctccggccg cggctccgtc tccgccaacc tccacgacga gaagaaggcg
721 ccggcgatgg ggtgggcggt gcggcgcgcc attgccgtcg gcacggcgag ggggctggag
781 tacctgcaca aggggtgcca gaggaggatc atccacaggg acatcaaggc atccaacgtg
841 cttctcaccg acgacttcca gcctcagatt tccgatttcg ggctcgccaa gtggctgccg
901 tcggagtgga cgcaccgggc gatcgccccg atcgaaggaa cattcgggtg tttggcaccg
961 gagtactaca cgcatggcat cgtcgacgag aagacggacg tgttcgcgtt cggcgtcttc
1021 ctcctggaga tcatgaccgg gagaaagccg gtggatggca gccacaagag cttgctcagc
1081 tgggcgaggc cgttcctgaa cgaggggagg atcgagtcgc tggtggatcc gaggatcggc
1141 ggcgactacg acggcgagga ggcgcggcgg ctggcgttcg tggcgtcgct gtgcatccgc
1201 tcgtcggcga agtggaggcc atccatgacc gaggtgctgg agctgctgga aggcgtcgag
1261 atccggcaag aacggtggac gatgcccgag gcagtggagg acgacgacga cgaggagcta
1321 tggagattcg atgacctgga tgacgaagac gacgaagatg aagaggagtt caacactgca
1381 tccccatctt cttgctcatc atctttgagc aattagtagt tagtaatagt atctaagatt
1441 gtgagtaagc ttgtgatgtt gttacaagat gaaatttttg atagttactc tccactgggc
1501 ccacttgtaa atagaaagga ttttcatctt atcatcatcc aacaggctat gaaaagcaag
1561 tagtacc
//