LOCUS AK105763 2635 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-202-D10, full insert
sequence.
ACCESSION AK105763
VERSION AK105763.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2635)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2635
/clone="001-202-D10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 411..2378
/db_xref="Osa1:LOC_Os02g36590"
/db_xref="RAP-DB:Os02g0575700"
/note="(RAP Annotation release2) Conserved hypothetical
protein"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R02-TIGRv4S1-000877F (Chr.2: short
arm=22090270, long arm=22094864, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG97353.1"
/translation="MNNGFPEIIRRGNPHLMDNSAVVIMGHSVASYTMDSHGRSSSCL
DHLGSSMENSSIHGKRGNNRRSGHGVSAQDDGCGLVLGLGPSPEMGSSAARRSKAPAP
ATLFSQRSFSFTEPGVLSLGLHRGDHGGATIQHLEEAPAGNIISFAAAVDEGSTSARR
SSGGYMPSLLFAPRPNASAPEEARHDVVADHTDNTVSGGGARHGHARRRVVRQLSPEP
EPEPSATMTETSFGVSSDVVTTVTNPVTTQPAAAAAQSQRRHPKKCRFKGCSKGARGA
SGLCIAHGGGQRCQKPGCHKGAESRTAYCKAHGGGRRCMQLGCTKSAEGKTDHCIAHG
GGRRCGHQGCPKAARGKSGRCIKHGGGKRCSVEGCIRSAEGRVGLCISHGGGRRCQYP
DCRKGAQGSTLYCKAHGGGKRCVFDGCLKGAEGSTPLCKAHGGGKRCMFEGGGLCPKS
VHGGTSFCVAHGGGKRCTVPGCGKSARGRTDCCVKHGGGKRCRVDGCAKSAQGSTEFC
KAHGGGKRCTWATGCEKFARGRSGLCAAHGTLMASQQRRAGGGGSMIGPGLFHGLVGA
MNNGYSSSGVSTASEYSDACDGAARRQELIPPQVLVPNSMKSSCSSAPPPSMGRGREG
GGFVVPEGRVHGGGLLSLLGGSFRNVDVDEL"
BASE COUNT 511 a 725 c 892 g 507 t
ORIGIN
1 ttaatctttt ggttgtttct acctttgctc tgatcgatct atgtctgctt cctggacttt
61 tcagtctggt aaattttttc catcagtcag aaattatctg gctacaacct gctgcttctt
121 gatgctcaac taccagagaa ttaacatcac tatctcagat ggtctagccc gtcagagttg
181 aagtacagtc tggatcaaaa ttttcctgaa atccagacag taagttcatg gacagggcgg
241 acacatcggg ttttgtcagt ggtggactca tcggtacttc gctgctgctg attttcttcc
301 acttcgtcta ctctccagtg cacatataga acaagatcaa gaagcacctg atctatcttt
361 gtctcgttgt ttcttccacc ttctgtacat tgcaggatta cttagcctag atgaataacg
421 gttttccgga aatcattcgc cgcggaaacc cgcatctgat ggataattcc gcagttgtga
481 taatgggaca ctctgtggca agctacacca tggacagcca tggacggagc tcttcttgcc
541 tagaccacct gggttcatca atggagaaca gtagtatcca tggcaagaga ggtaacaacc
601 ggaggtcggg tcatggtgtg tctgcgcaag atgacggctg cgggttggtt cttggattgg
661 gtccatcgcc ggagatgggc tcctccgcgg cgcgcaggtc gaaagcgccg gcgccggcga
721 cattgttcag ccagaggagc ttctccttca ctgagccagg ggtgctcagc cttgggcttc
781 atcggggaga tcatggtggc gcgacgattc agcatctgga agaagcgcct gctgggaaca
841 tcatctcctt cgccgccgcc gtcgatgagg gctcgacgtc ggcgaggagg agctccggtg
901 ggtacatgcc gtcgctgctc ttcgcgcctc ggcccaacgc gtcggctcct gaagaggctc
961 gtcatgatgt cgtggcggat cacacggaca acaccgtgag tggtggtggc gcgcgccatg
1021 gccatgcgcg gcgtcgcgtc gttcgtcagc tcagccctga gcctgagcct gagccttcgg
1081 cgaccatgac ggagacctcg ttcggtgtga gctccgacgt ggtcacgacg gtgaccaatc
1141 ctgtgacgac gcagccggcg gcggcggcgg cgcagtcgca acgccggcat ccgaagaagt
1201 gcaggttcaa ggggtgctcc aaaggagcgc gaggcgcgtc ggggctgtgc atcgcccatg
1261 gcggcgggca gaggtgccag aagcccgggt gccacaaggg cgccgagagc cgcacggcct
1321 actgcaaggc gcatggcggt ggccgccggt gcatgcagct cggctgcacc aagagcgccg
1381 aggggaagac ggatcactgc atcgcccacg gcggcggccg ccggtgcggg caccagggct
1441 gcccgaaggc cgcgcggggg aagtccgggc ggtgcatcaa gcatggcgga gggaagaggt
1501 gttcggtcga gggctgcatc cggagcgcgg aggggagggt cgggctctgc atctcccacg
1561 gcggcgggcg gcggtgccag tacccggact gccgaaaggg cgcgcagggg agcacgctgt
1621 actgcaaggc gcacggcggc ggcaagcggt gcgtgttcga cgggtgcctc aagggcgcgg
1681 aggggagcac gccgctgtgc aaggcgcacg gcggcgggaa gcggtgcatg ttcgagggcg
1741 gcgggctctg ccccaagagc gtccacggcg gcaccagctt ctgcgtggcg cacggcggcg
1801 ggaagcggtg cacggtgccc gggtgcggca agagcgcccg cggccgcacg gactgctgcg
1861 tcaagcacgg cggcggcaag cggtgcaggg tcgacggctg cgccaagagc gcgcagggga
1921 gcacggagtt ctgcaaggcc cacggcggcg gcaagcgctg cacctgggcc accggctgcg
1981 agaagttcgc ccgcgggcgg agcggcctct gcgccgcgca cggcacgctc atggcctcac
2041 agcagcgtcg cgccggcggc ggcgggagca tgatcggtcc agggctcttc cacggcctcg
2101 tcggcgccat gaacaacggc tactcgtcct ccggcgtcag cacggcgtcg gagtactccg
2161 acgcctgcga cggcgcggcg aggaggcaag agctgatacc tcctcaggtg ctggtcccga
2221 actccatgaa gtcgtcgtgc tcgtcggcgc cgccgccgtc gatgggcagg ggcagagagg
2281 gaggagggtt cgtcgtcccc gaggggaggg tgcacggtgg cggcctcctg tcgttgctcg
2341 gcgggagctt caggaacgtc gacgtcgacg agctctgaag cagcagcgct cgtgtgagaa
2401 aatcagtgtc agtttctgca tctcaaaaaa cggaggaaaa aaaacgaaga gaaaaaaaag
2461 aaagagattc tatagctcat atagatgtta ggttggtacg aaacttcata gattgttttg
2521 atgttattat cgtgtcaaga ttcaagtctc agggcatgaa cttgtcaggg gatttcaaat
2581 gttttgagtt cgttgtgaat aaaatgtagt agacatgaac ttgtcagggg atttc
//