LOCUS AK105638 1729 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-200-E03, full insert
sequence.
ACCESSION AK105638
VERSION AK105638.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1729)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1729
/clone="001-200-E03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1729
/db_xref="Osa1:LOC_Os01g40860"
/note="(Rice Genome Annotation Project) retinal
dehydrogenase 1, putative, expressed"
/note="mapping to R01-TIGRv4S1-000944F (Chr.1: short
arm=23424184, long arm=23433068, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 377 a 523 c 513 g 316 t
ORIGIN
1 acatctccaa acttccaatt tctctctcca catctctctg tgtttctttt atttctcctc
61 tgctcgcggc gatggcggcg gcgaacggcg gcgacagcaa ggggttcgag gtgccgaagc
121 tggagatcaa gttcaccaag ctcttcatca atggccgctt cgtcgacgcc gtctccggca
181 agacattcga aacccgtgac ccgcgcaccg gcgaggtcat cgccaagatc gccgaaggag
241 acaaggccga catcgacctc gccgtgaagg ccgccaggga ggccttcgac catggcccct
301 ggccaagaat gtccggcttt gcgaggggaa ggatcctgca caagttcgcg gacctggtgg
361 agcagcacgt ggaggagctg gcggcgctgg acacggtgga cgccggcaag ctgttcgcga
421 tggggaagct cgtcgacatc cccggcggcg cgaacctgct ccggtactac gccggcgcgg
481 cggacaaggt gcacggcgag acgctcaaga tggcgcggcc gtgccacggg tacacgctca
541 aggagcccgt cggcgtcgtc ggccacatcg tgccgtggaa ctaccccacc accatgttct
601 tcttcaaggc cagcccggcg ctcgccgccg gctgcaccat ggtcgtcaag cccgccgagc
661 agacccccct ctccgcgctc ttctacgccc acctcgccaa gcttgccggc gtccccgacg
721 gcgtgctcaa cgtcgtcccc ggcttcggcc ccaccgccgg cgccgctatc tcctcccaca
781 tggacattga caaggtgagc ttcaccggct cgacggaggt cggccggctg gtgatggagg
841 cggcggcgaa gagcaacctg aagcccgtct cgctcgagct gggtggcaag tctccggtca
901 tcgtgttcga cgacgccgac ctcgacacgg ccgtgaacct ggtccacatg gcctcctaca
961 ccaacaaggg tgagatctgc gtcgccggct cgcgaatcta tgtccaggag gggatctacg
1021 atgcgttcgt gaagaaggcg accgagatgg ccaagaaatc ggtggtcgga gatccgttca
1081 acccgcgagt tcatcaaggc cctcagattg acaaggagca atacgagaag atcctcaagt
1141 acatcgacat cggtaagcgc gaaggcgcga cgttggtcac cggagggaag ccctgcggcg
1201 aaaacgggta ctacatcgag cccaccatct tcacggacgt caaggaagaa atgtcgatcg
1261 cgcaagagga aaccttcggg ccggtgatgg ccctcatgaa attcaagacg gttgaggagg
1321 cgatccagaa ggcgaacagc acccggtacg gcctggctgc cggcatagtc accaagaaca
1381 tcgacgtcgc gaacacggtt tcgcggtcga tccgggcagg ggcaatctgg atcaattgct
1441 acctcggctt cgaccccgac gtgccgttcg gggggtacaa gatgagcggc ttcggcaagg
1501 acatgggcat ggacgccctt gagaagtacc tccacaccaa ggcggtggtc acccctctct
1561 acaacacccc ttggctatga tctgatgatg aacagcacag aaagattaat tacagtggaa
1621 aaaaataaca tttctatata tacagctgaa aggttgggtt atatttgtgg ttagttgatt
1681 gcttgtatca aatatcaatt tgtcggaata aagacagtat atttcagtt
//