LOCUS AK105626 1441 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-200-C12, full insert
sequence.
ACCESSION AK105626
VERSION AK105626.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1441)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1441
/clone="001-200-C12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1441
/db_xref="Osa1:LOC_Os10g35720"
/db_xref="RAP-DB:Os10g0500700"
/note="(RAP Annotation release2) Glutaredoxin-related
protein family protein"
/note="(Rice Genome Annotation Project) OsGrx_S17 -
glutaredoxin subgroup II, expressed"
/note="mapping to R10-TIGRv4S1-000556F (Chr.10: short
arm=18767256, long arm=18770856, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 348 a 313 c 418 g 362 t
ORIGIN
1 gcgagtcgtc ttctcatctc tcctccgccg ccgccgcctg ctgctgcatc tctcgtcgtc
61 gccggtgagg gaagggaggg gaggggggag ggcgtgatgg cggcggtgag ggaggtgggg
121 tcgaaggcgg agctggaggc ggcggcggga ggggcgcggg ccgccgcggt gcacttctgg
181 gcggcgtggt gcgaggcgtc caagcagatg gacgaggtct tcgcgcacct cgccgtcgac
241 ttctcccacg ccgtcttcct ccgggttgaa gctgaggaac aacccgaaat ttcagaggca
301 tatggagtta cagcagtgcc atattttgtt ttcttgaagg aaggtaaaac tgttgatact
361 ctggagggtg caaatccagc cagcttggcc aataaggttg caaagttagc tgggcctgcc
421 agcgttgctg agtctgctgt gcctgctagc ctgggtgtgg ctgctgggcc tgctgtactt
481 gaaaaggttc aagagatggc acagcaaaat ggagcttctg ccactagtag tgcagaagat
541 gcattgaaca agagattgga gcagcttgtc aattcccatc ccgtcttctt atttatgaag
601 ggaacccctg agcaaccaag gtgtggtttc agtcgaaaag tagttgacgt tttgaagcag
661 gaaggagttg aatttgggag ctttgacatc ctaacagata acgatgtacg tgaaggaatg
721 aaaaagttct caaactggcc gacttttcct cagctctact gcaaaggtga gctgcttggc
781 ggatgtgata ttgtgattgc tatgcatgaa agcggtgaac tgaaggatgt ttttaaggag
841 cacaacattc cgctgcagcc acagggaagc aaaaacgagg aggcagtgaa agccaagcct
901 gatactgaga agagtggtgc agtttctgaa ccagctttgc ttactgcagc tcagaaggaa
961 cgcttggaaa gccttgttaa tttcagcaca gtgatggcat ttataaaagg tacacctgag
1021 gagcccaagt gtggattcag tggaaaacta gtgcatattc ttaagcaaga gaagatccct
1081 ttctcaagtt ttgacattct tacggatgat gaggttaggc agggtctaaa gcttctctca
1141 aactggccta gttaccctca actgtacata aacggtgaac tgattggagg ctgtgacatc
1201 gttcttgagc tggagaagag tggagagctg aagtccacgc tttcggagtg aggaaaattt
1261 accgtcgtat ccgcatcttc ctcttcctgg tgtttctacc atccgtcgac catcgagttt
1321 gctctattga tggcattttc ttgtattcat agatccgtat ttcaaactta gatatatgcc
1381 tgtgccacat cgcttttaac tgtgacatct gcagaagaat aactaagacg acctgttcag
1441 t
//