LOCUS AK105570 1470 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-128-C12, full insert sequence. ACCESSION AK105570 VERSION AK105570.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 1470) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..1470 /clone="001-128-C12" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..1470 /db_xref="Osa1:LOC_Os01g10130" /db_xref="RAP-DB:Os01g0197900" /note="(RAP Annotation release2) RNA dependent RNA polymerase family protein" /note="(Rice Genome Annotation Project) RNA-directed RNA polymerase, putative, expressed" /note="mapping to R01-TIGRv4S1-000320R (Chr.1: short arm=5284937, long arm=5289760, direction=reverse) for TIGR Pseudomol ver4" BASE COUNT 437 a 301 c 342 g 390 t ORIGIN 1 taatggatac tacagaccct accggaacac tcagacctaa tgaagtctgc gtgatacttg 61 aaaatggcca gttttctgga gatgttcttg tttataaaca ttctgggtta cattttggtg 121 atatacatgt cttgaaagca acatatatta gggatctaga aaaggagtat gtgggatatg 181 ctaaatatgc tatactcttc cctatttctg ggccgcggtc tttggctgat gagatggcca 241 acagtgattt tgacggtgac atttattggg tctcaaaaaa cccaaagtta ttagaacact 301 tcaaaccttc tgaaccgtgg gtacaagcta ttaaaccaaa aaagaccaag caaaagaaac 361 ctcaggattg taatgaatcc aaacttgaaa ggctgctatt tcatgagttc ttgaaaacaa 421 gatttactcc cagttttgca cttggtacgg cagctgatag ctggttagca tatatggacc 481 gactattgac agattcactt gacgaaattg aaaagaaact aatagaggaa aagatgctaa 541 agttagttga cctgtattat ttggctttgg atgctccgaa gactgggaac aaggtcaata 601 ttccaagtga tctgatggta aaacaatacc cccacttcat gggccgcagt ttttcgtacc 661 attcatcatc catacttgga caaatctatg ataaagcaga agatgtagaa tctctgcgat 721 cttgtaatgt tcaaccaatc ggggtatcat tgctcccatg tttcatggaa agagaagcac 781 ctccagcagc caggcacctc tggcaacacc gctacgagga gtacttgact gacagtacaa 841 tgctctatcg cgcaatggta gataaagaag aaaggaacat gaagttccaa gaactctacg 901 agaagtacaa gcatatgctc tacgatgcat ctgaattcga gcagacacag agggaccccg 961 acgacgtgtt ctcggaagcc tgcgtgatct accagattgt gtatgagaaa gcacggtgga 1021 gcaacgacgc cagcaggtgt ggcttcgcct ggaaggtcgc cggccgcgcg ctgtgccact 1081 tctacgcgct caagaacgag ggtgacaccg cgctctgctc gcttccactt cttcgcaaga 1141 tcatcaagaa ggatcatcgc aggtagagtg tcgtgtttat ggactactac caccaaatta 1201 actatctatt gtatcaagta tgtgtgtact gtagcagtaa tgttaggagc agacttttta 1261 agctggtgat ttagcacttc tcatgaacat gtgggacaaa gtactactag aaaaattatt 1321 atgggccatg tttataccgg catggctgct tcaagtgaac ctgctgtagt gaactagtga 1381 ttatctgtaa gcgcagtgtc cagtgtgaca atgggcacaa gtatgcatca ctgttggtgt 1441 gcaaaatgga cagcatggat tctgtatggt //