LOCUS       AK105570                1470 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:001-128-C12, full insert
            sequence.
ACCESSION   AK105570
VERSION     AK105570.1
KEYWORDS    oligo capping; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 1470)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..1470
                     /clone="001-128-C12"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..1470
                     /db_xref="Osa1:LOC_Os01g10130"
                     /db_xref="RAP-DB:Os01g0197900"
                     /note="(RAP Annotation release2) RNA dependent RNA
                     polymerase family protein"
                     /note="(Rice Genome Annotation Project) RNA-directed RNA
                     polymerase, putative, expressed"
                     /note="mapping to R01-TIGRv4S1-000320R (Chr.1: short
                     arm=5284937, long arm=5289760, direction=reverse) for
                     TIGR Pseudomol ver4"
BASE COUNT          437 a          301 c          342 g          390 t
ORIGIN      
        1 taatggatac tacagaccct accggaacac tcagacctaa tgaagtctgc gtgatacttg
       61 aaaatggcca gttttctgga gatgttcttg tttataaaca ttctgggtta cattttggtg
      121 atatacatgt cttgaaagca acatatatta gggatctaga aaaggagtat gtgggatatg
      181 ctaaatatgc tatactcttc cctatttctg ggccgcggtc tttggctgat gagatggcca
      241 acagtgattt tgacggtgac atttattggg tctcaaaaaa cccaaagtta ttagaacact
      301 tcaaaccttc tgaaccgtgg gtacaagcta ttaaaccaaa aaagaccaag caaaagaaac
      361 ctcaggattg taatgaatcc aaacttgaaa ggctgctatt tcatgagttc ttgaaaacaa
      421 gatttactcc cagttttgca cttggtacgg cagctgatag ctggttagca tatatggacc
      481 gactattgac agattcactt gacgaaattg aaaagaaact aatagaggaa aagatgctaa
      541 agttagttga cctgtattat ttggctttgg atgctccgaa gactgggaac aaggtcaata
      601 ttccaagtga tctgatggta aaacaatacc cccacttcat gggccgcagt ttttcgtacc
      661 attcatcatc catacttgga caaatctatg ataaagcaga agatgtagaa tctctgcgat
      721 cttgtaatgt tcaaccaatc ggggtatcat tgctcccatg tttcatggaa agagaagcac
      781 ctccagcagc caggcacctc tggcaacacc gctacgagga gtacttgact gacagtacaa
      841 tgctctatcg cgcaatggta gataaagaag aaaggaacat gaagttccaa gaactctacg
      901 agaagtacaa gcatatgctc tacgatgcat ctgaattcga gcagacacag agggaccccg
      961 acgacgtgtt ctcggaagcc tgcgtgatct accagattgt gtatgagaaa gcacggtgga
     1021 gcaacgacgc cagcaggtgt ggcttcgcct ggaaggtcgc cggccgcgcg ctgtgccact
     1081 tctacgcgct caagaacgag ggtgacaccg cgctctgctc gcttccactt cttcgcaaga
     1141 tcatcaagaa ggatcatcgc aggtagagtg tcgtgtttat ggactactac caccaaatta
     1201 actatctatt gtatcaagta tgtgtgtact gtagcagtaa tgttaggagc agacttttta
     1261 agctggtgat ttagcacttc tcatgaacat gtgggacaaa gtactactag aaaaattatt
     1321 atgggccatg tttataccgg catggctgct tcaagtgaac ctgctgtagt gaactagtga
     1381 ttatctgtaa gcgcagtgtc cagtgtgaca atgggcacaa gtatgcatca ctgttggtgt
     1441 gcaaaatgga cagcatggat tctgtatggt
//