LOCUS AK105402 2889 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:001-123-D07, full insert sequence. ACCESSION AK105402 VERSION AK105402.1 KEYWORDS oligo capping; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2889) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2889 /clone="001-123-D07" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 103..1023 /db_xref="Osa1:LOC_Os05g48040" /note="(Rice Genome Annotation Project) transparent testa 12 protein, putative, expressed" /note="mapping to R05-TIGRv4S1-001047F (Chr.5: short arm=27458856, long arm=27462652, direction=forward) for TIGR Pseudomol ver4" /protein_id="BAG97227.1" /translation="MEERIPLLSKRFPADGTAGVGGGREEEGGDRWWSGLAREAGKVG SMALPMAAMSVAQNAVQVASNMMVGHLPGVLPLSASAIATSLASVSGFSLLVGMASGL ETLCGQAYGAKQYDKLGVQTYRAIVTLTVVTIPISLLWVFIGKLLTLIGQDPVISHEA GRYIVWLIPGLFAYAVCQPLTKFLQSQSLIFPMLWSSIATLLLHIPLSWLLVFKTSMG FTGAALAISISYWLNTFMLAAYIRFSCSCKVTRSPPTIEAFRGVGLFLRIALPSALML CFEWWSFEILVLLSGLLPNPELESSVLSIW" BASE COUNT 693 a 661 c 695 g 840 t ORIGIN 1 agacaccaaa gccgtctctg agaagaagag agggagagag agagagagag agagagctcg 61 gtcggtggag gcgacgacga cgacgcgcgc actgcggccg ccatggagga gagaatacct 121 ctgctctcga aacgattccc ggcggacggc accgccggag tgggaggagg gagggaggag 181 gagggcggag ataggtggtg gagcgggctg gcgcgggagg caggaaaggt ggggtccatg 241 gcgctgccca tggccgcgat gagcgtggcg cagaacgccg tgcaggtggc gtccaacatg 301 atggtggggc acctccccgg cgtcctcccg ctctccgcct ccgccatcgc cacctccctc 361 gccagcgtct ccggcttcag cctcctcgtt ggaatggcaa gtggattaga aactctctgc 421 ggtcaagctt atggggcaaa acagtatgac aagttaggag tgcaaaccta cagagcaata 481 gtcacactaa cagtagtcac aattcccatc tcacttctat gggtattcat aggcaaactc 541 ttgaccctaa taggtcagga ccccgtgatc tcacatgaag ctggaagata catagtgtgg 601 ttgattccag gactcttcgc atacgcggtc tgccagcctc tcacaaaatt tctgcagtct 661 cagagtctaa tatttcccat gctctggtcc tccattgcaa ctctgctcct gcacatccct 721 ctgtcttggc tgttggtgtt caagaccagc atgggattta ctggagctgc tttagcaatt 781 agcatatctt actggttgaa tacattcatg ctcgctgcat acatcagatt ctcatgttct 841 tgtaaggtga ctcgctcgcc tcctacaatc gaggcattca gaggagtcgg tttgtttctg 901 cgaatagcac taccatctgc actaatgtta tgttttgaat ggtggtcatt tgagatcctt 961 gttctcctgt caggacttct acccaaccca gagcttgaaa gttcagttct ttccatatgg 1021 taagaaaata agagtcctca atgtcgcact taacaatata ttctcttata gctgcacctt 1081 ttgttatttt ataagcactc catttatgca gcttgacgac tacctctttg atgtatacta 1141 taccatatgg tcttggaggc gctgcaagca ctcgagtagc aaatgagtta ggcgctggga 1201 atcctgaagg agctcgatcg gctgttcacc ttgtaatgtc tattgctggg acagaggcag 1261 ttcttgttac tgggatgctg tttgcagcac agcgcatctt gggctatgct tacagcagtg 1321 atgaggaggt tgtcacatat ttcacctcaa tggttccttt tgtgtgcatc tcagttgctg 1381 ctgatagcct acaaggagtt ttatcaggtt acatttccta acatttgatt tatctgttaa 1441 ttattcattc ccttcaaaag aatggaaaaa atggagtatt cagctatgcc tgaagttttc 1501 gaaaatttga tctaactggc cttgcctctc tcttatttca ttttttttat ataactggtt 1561 cttatagttt tggggccatt acatttacac cattcagtat ctttagcctg ttagcccaac 1621 ggtatctttt accccttagt ttgattgctt aattcaatgt gtgcgctgtt gtcaaatctc 1681 taccaagacc tcaggtagca agttaatttc agtcactccg gtatcgtaaa gacataccag 1741 gtaacttgcc gcttcttgtt tttcctttgt tcaatgaaac taatgctatt ttgtgttgtg 1801 gaggccgaca ttgttactcg gggagttacc tgtttgttcc ttcaaacatg tgctcttacg 1861 tgaacatgga tatggtggtg tttacaatca acacgcatct atcagcgatg tcgtcttaag 1921 tgtggactcc acttcactaa gtatgcaatt acacctttcc cctggctagt ggtagactgg 1981 tagtgtggca ctggtgtttg cttcacaggt ctatttcatt gtttgtgctt ctgagcagtt 2041 gtggacatgc caaaaacaat gaactgaact tgcgaaaaca cacatctcat tcagctccag 2101 cacggaaaca tactattgtt tctcctctct agaagattat atcaagatag atgcaccaca 2161 cgtcattgct taacactgac agatattact tgttatcagg tattgctcgg ggttgcggat 2221 ggcagcacct gggagcctat gtaaacctcg gttcattcta cctggttggc attccggtag 2281 ccctacttct tggctttggt ttcaagatgg aaggcaaagg gctttggctg ggcatcgcct 2341 gtggttccgt attacaattc ttgcttctcg ccgtcattgc attcttcagc aactggcaaa 2401 agatggtttg tttctttatc tgaaactcca agccttctcc ccaacatcat caaatcttga 2461 tcactcgaaa actgaatcat gtttctcccg cctactgacc tgatgctgct tctgcaggcc 2521 gagaaagcga gggagagaat tttcggcgag acaccgtcag agaagcaaca tttggtgctt 2581 gatgcaacga attcggtctg attctgcatc ctgatccgtt gacgcgaact gaagcggatg 2641 atcggatcat gtggaggaga ctggctcctc tggatgtgta gggaatctgc tgaagaagta 2701 aagcagtgtg catagttgta ctgttgcatt tgttggatcc gggagaatgt atcaagaact 2761 ctatgtgaaa tgtatgatgg cgatatgtat gtacgagatc gaggttccga atacttccag 2821 cctatagaag tatagataaa ttttccactc ttcgtggaca gaaagaataa aaggctaatc 2881 ttctctcgg //