LOCUS AK105028 1667 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-012-E01, full insert
sequence.
ACCESSION AK105028
VERSION AK105028.2
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1667)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1667
/clone="001-012-E01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 128..1381
/db_xref="Osa1:LOC_Os03g44620"
/note="(Rice Genome Annotation Project) dnaJ protein,
putative, expressed"
/note="mapping to R03-TIGRv4S1-001190F (Chr.3: short
arm=25081496, long arm=25085064, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG97073.1"
/translation="MFGRAPKKSDNTKYYEILGVPKTASQDDLKKAYRKAAIKNHPDK
GGDPEKFKELAQAYEVLSDPEKREIYDQYGEDALKEGMGGGGSHVDPFDIFSSFFGPS
FGGGGSSRGRRQRRGEDVIHPLKVSLEDLYNGTSKKLSLSRNVLCAKCKGKGSKSGAS
MRCPGCQGSGMKITIRQLGPSMIQQMQQPCNECKGTGESINEKDRCPGCKGEKVIQEK
KVLEVHVEKGMQHNQKITFPGEADEAPDTVTGDIVFVLQQKDHSKFKRKGDDLFYEHT
LSLTEALCGFQFVLTHLDNRQLLIKSNPGEVVKPDQFKAINDEGMPMYQRPFMKGKLY
IHFTVEFPDSLAPEQCKALEAVLPPKPASQLTEMEIDECEETTMHDVNNIEEEMRRKA
QAAQEAYDEDDEMPGGAQRVQCAQQ"
BASE COUNT 430 a 405 c 468 g 364 t
ORIGIN
1 accaactttg acccgtcctc ctcctccgca tcccccatcc cctcctcccc ggcggcggcg
61 gcggcgcgga ggcggcggca cgggagcggc tagtggtttc gtcggcggag gcggaggcgg
121 ggccaagatg ttcgggcgcg cgccgaagaa gagcgacaac accaagtact acgagatcct
181 gggggtcccc aagaccgcct cccaggacga cctcaagaag gcgtaccgca aggccgccat
241 caagaaccac cccgacaagg gcggcgaccc cgagaagttc aaggagcttg cacaagctta
301 tgaggtattg agtgacccgg agaaacgtga aatctatgac caatatggtg aagatgccct
361 caaggaagga atgggtggag gcggatccca tgttgatcca tttgacatct tttcatcatt
421 ctttggacct tcttttggtg gtggtggcag cagcaggggc agaaggcaaa ggaggggaga
481 ggatgtgatc catccgctta aggtttctct agaagatctt tacaatggta cttcaaagaa
541 gctctctctt tcccgcaatg tcctctgcgc caagtgcaag ggcaagggtt ccaagtctgg
601 tgcttccatg aggtgcccag gttgccaggg gtctggcatg aaaatcacca tccgccagct
661 ggggccctcc atgatacagc agatgcagca gccttgcaat gagtgtaagg ggactggaga
721 gagcattaat gagaaggatc gctgcccagg ctgcaagggc gagaaggtta ttcaggagaa
781 gaaggttctg gaggttcacg ttgagaaggg gatgcaacac aatcagaaga tcactttccc
841 tggtgaagct gatgaggcgc ctgataccgt tacgggagac attgtattcg tcctccagca
901 gaaggaccac tccaagttca aaaggaaggg cgatgatctc ttttatgagc acaccttatc
961 tctgactgaa gcactttgtg gtttccaatt tgtcctgaca catctggaca acagacagct
1021 gctcattaag tcaaaccccg gtgaagttgt taagcctgac caattcaagg caataaacga
1081 tgagggaatg ccaatgtacc agaggccttt catgaagggg aagctctaca ttcatttcac
1141 ggtggagttc cctgattccc tggcgcctga acaatgcaag gctctcgagg ctgtgcttcc
1201 accgaagcct gcatcccagc tgacagaaat ggagatagat gaatgcgagg agaccacgat
1261 gcacgatgtc aacaacattg aggaagagat gcgcaggaaa gcccaagctg ctcaggaggc
1321 gtatgatgag gacgatgaga tgcctggagg tgcccagaga gttcagtgcg cgcaacagta
1381 agcagagtat gtcatctagg aaactcgtca ttggttcaca aatcaacgtc gtcgcaaagg
1441 tttgccgtaa atttttggac ccaaagatga ttgtgctctg tttcccgttg cggcgaacat
1501 gaagatagtg aagctgattt tacacccctt aagccgggac tgtatccctt ttgtttgcga
1561 cttaaaaaat gctactcgta tctagtaata gctggctacg ttttactatg ctgtgagact
1621 cgtagagttt tacctcctaa aaagaaactc ggtatgttgt gaatgcc
//