LOCUS AK105025 1476 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-011-G08, full insert
sequence.
ACCESSION AK105025
VERSION AK105025.2
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1476)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1476
/clone="001-011-G08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1476
/db_xref="Osa1:LOC_Os03g47970"
/db_xref="RAP-DB:Os03g0684000"
/note="(RAP Annotation release2) Similar to GATA
transcription factor 1 (AtGATA-1)"
/note="(Rice Genome Annotation Project) GATA
transcription factor 25, putative, expressed"
/note="mapping to R03-TIGRv4S1-001233R (Chr.3: short
arm=27218880, long arm=27223288, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 384 a 375 c 392 g 325 t
ORIGIN
1 acacccagta ccaagtgcac agccgcagcg ccgcatcacc gccttccatt tccacatcta
61 gggtttcagt tgagtcgagt tgagtccccc tccccccacg gccccacctc gccaccgccg
121 gccatgcccg acgcggcggc cgccgccgcc gccgcccagg acgccgacgc cgtgatgcgc
181 gacgcacccg ccgacgcagc agcaggcggc ggcgacaacg acgacgacga cggggatgac
241 ggcacagaag aggacgagga ggaggatgac gacgaggagg gcgatgaaga ggagctgccg
301 ccggccgagg atccggcggc cccggagccg gtctcggcgt tgttgccggg gagcccgaac
361 cagctgacgc tgctgttcca gggcgaggtc tacgtgttcg aatccgtgat gcctgagaag
421 gttcaagctg ttctgttatt gttaggaaga agtgaaatgc caccaggttt agctaacatg
481 gttttaccaa atcaacgtga gaacagaggt tatgatgatt tacttcagag aacagacatt
541 cctgccaaaa gggttgcttc actcattagg ttccgtgaaa agcggaagga aagaaatttc
601 gataaaaaaa tacgttacgc cgtacgcaaa gaagtggcac tcaggatgca acgtaggaag
661 ggtcaatttg ccggaagagc aaatatggag ggagagtccc tatctccagg ctgtgaactt
721 gcttcccagg gttcaggcca agattttcta tctcgagaat caaagtgtca gaattgtggc
781 actagtgaaa aaatgacacc ggcaatgcgc cgtggtccag ctggtccaag gactctgtgc
841 aacgcctgcg gactgatgtg ggctaacaag ggtaccctga gaaattgccc caaggcaaaa
901 gttgaatctt ctgtggttgc aactgagcag agcaatgcag ctgtctctcc gagtggaatc
961 gacaacaagg aattggtggt accaaaccct gaaaacatta ccgcaagcca tggcgaagtc
1021 atgggcgaca gcactccggc aaatgaagcc gagataggag cgccaaaggc gcagtcacaa
1081 taagtttatg tttaacctgt catgattgaa accaaaagat tctggattct ttgcctacag
1141 gctatacagc taaacatcac aatagaaggt ctttttcctg accaaagtat actgattctc
1201 ctcaagtgta caattcttgc ttgccagcac atgtaaatgt aattgtaatt aacataaaga
1261 gcctgattgg tgcctgttgt gtaaacccct cattctcatg acatctaaga tagcacatca
1321 agcagactgt catgtacttc cggctttgga gctgcttctg aaggggagtt gtctgatggt
1381 gcttagtgtc ccttcctaac tactacgcct gtaaagttgt accaactgat ccttgtacag
1441 tttgtattaa tgtgtcgtct ctgtctttcg ttttcc
//