LOCUS AK104977 1375 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-124-A06, full insert
sequence.
ACCESSION AK104977
VERSION AK104977.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1375)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1375
/clone="001-124-A06"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 42..1163
/db_xref="Osa1:LOC_Os09g35800"
/note="(Rice Genome Annotation Project) UDP-glucose
4-epimerase, putative, expressed"
/note="mapping to R09-TIGRv4S1-000682R (Chr.9: short
arm=20600134, long arm=20602468, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG97056.1"
/translation="MVSGGGVAAENGEMVGNGEGRKGAGASVLVTGGAGYIGTHTVLR
LLEKGFAVTVVDNFHNSVPEALDRVRLIAGAALSARLDFIAGDLKSKDDMEKVFAAKR
YDAVIHFAGLKAVGESVAHPQMYYENNVAGTMNLYSAMTKYGCKKIVFSSSATVYGQP
EKTPCVEDSKLSALNPYGTTKLVLENYFRQVQAADPEMRVILLRYFNPIGAHRSGDIG
EDPRGIPNNLLPYIQQVAVGRRPELNVYGVDYPTRDGTAIRDYIHVVDLADGHIAALE
KLFATPDIGCVAYNLGTGCGTTVLEVVKAFEEASGKKIPIKICPRRPGDCTEVYASTD
KAKKELGWSARFGIEDMCRDQWNWAKKNPYGYSANAEQN"
BASE COUNT 331 a 361 c 426 g 257 t
ORIGIN
1 aaaccgagag agagaggcgc acacacgaag acgaggcggc gatggtgagc ggcggaggag
61 tagcggcgga gaacggcgag atggtgggga acggggaggg gaggaagggt gcgggggcga
121 gcgtgctggt gacgggggga gcggggtaca tcgggacgca cacggtgctg cggctgctgg
181 agaaggggtt cgcggtcacc gtcgtcgaca acttccacaa ctccgtcccg gaggcgctcg
241 accgcgtccg cctcatcgcc ggcgccgccc tctccgcccg cctcgacttc atcgccgggg
301 atctcaagag caaggacgac atggagaagg tgttcgccgc caagaggtat gacgccgtga
361 tccacttcgc cgggctgaag gcggtggggg agagcgtcgc gcacccgcag atgtactacg
421 agaacaacgt cgccggcacc atgaacctct actccgccat gaccaagtac ggctgcaaga
481 agatagtgtt ctcgtcgtcg gcgacggtgt acggccagcc ggagaagacc ccctgcgtcg
541 aggattccaa gctgagcgct ctcaacccat acggcaccac caagctcgtc ctggagaact
601 acttccggca ggtgcaggcc gccgacccgg agatgagggt gatcctgctc aggtacttca
661 accccatcgg cgctcaccgg agcggcgaca tcggggagga ccccaggggc atccccaaca
721 accttcttcc gtacatccag caggtcgccg tcggccgccg ccccgagctc aacgtctacg
781 gcgtcgacta cccaaccagg gacggcaccg cgatcaggga ttacatacat gtagtggacc
841 ttgccgatgg ccacattgcc gcactggaga agctcttcgc tactcctgac attggttgtg
901 tggcttacaa tctaggaaca gggtgtggaa caacggtgct cgaggtggtg aaggcgttcg
961 aggaggcgtc cggaaagaaa attcctatca agatttgccc cagaagacct ggagattgca
1021 ctgaggttta cgcttccact gacaaggcca agaaggagct cggatggagt gctcggtttg
1081 gaatagagga catgtgcagg gaccagtgga attgggccaa gaagaatccg tacggataca
1141 gcgccaatgc tgagcagaat tagggcgatc atattaccac ttatatagta ctagtatcaa
1201 aattgtccat ggtcttatga actgtgtgac tagaaaatgt taataagaca tgcgtgcctc
1261 ttaagtggag tataccaatt cttatttagt cgaatccgtt gtgattttag atactggcaa
1321 atgttaatca ggtttattta aatactatac tagtagcaag atcaaattga acaat
//