LOCUS AK104749 1102 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-038-F04, full insert
sequence.
ACCESSION AK104749
VERSION AK104749.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1102)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1102
/clone="001-038-F04"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 3..920
/db_xref="Osa1:LOC_Os01g47690"
/note="(Rice Genome Annotation Project)
hydroxyacylglutathione hydrolase 3, mitochondrial
precursor, putative, expressed"
/note="mapping to R01-TIGRv4S1-001098R (Chr.1: short
arm=27601596, long arm=27605024, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG96925.1"
/translation="MVALLRSCRRLIPHLSACAAAAPSSSSSCAPRARPISRGLRLLP
VVLAMAGYSSGSAAEGRRLLFRQLFEKESSTYTYLLADVGDPEKPAVLIDPVDRTVDR
DLNLIKELGLKLVYAMNTHVHADHVTGTGLIKTKLPGVKSVIAKVSKAKADHFIEHGD
KIYFGNLFLEVRSTPGHTAGCVTYVTGEGDDQPSPRMAFTGDALLIRACGRTDFQGGS
SDELYESVHSQIFTLPKDTLLYPGHDYKGFTVSTVEEEVAYNARLTKDKETFKKIMDN
LNLAYPKMIDVAVPANLLCGIQDPPPSKV"
BASE COUNT 269 a 264 c 291 g 278 t
ORIGIN
1 aaatggtggc gctgcttcgc tcgtgccgcc gcctgatccc gcacctgtcc gcctgcgccg
61 ccgccgcgcc gtcgtcgtca tcgtcgtgcg ctcctcgggc taggccgatc tcgcggggac
121 tgcggctgct gccggtggtg ctcgcaatgg cggggtacag cagcggctcc gccgcggagg
181 ggaggaggct gctgttcagg cagctgttcg agaaggagag ctccacctac acctacctcc
241 tcgccgacgt cggggacccc gagaaacccg ccgtgttgat tgaccctgtg gacagaacag
301 ttgatagaga tctcaatctt atcaaggagt tgggcttgaa gctagtctat gctatgaata
361 cccatgtgca tgctgatcat gtcactggaa caggattaat aaagactaag ttacctggag
421 taaagtccgt gattgcaaaa gtaagcaaag caaaagcaga ccattttatt gagcatgggg
481 acaaaatata cttcggtaac ctcttccttg aggtacgatc tactcctggc catactgctg
541 gctgtgtgac ttatgtaaca ggtgaaggcg atgatcaacc ttcaccaaga atggctttta
601 ctggtgatgc cttgcttata cgtgcatgtg gaaggacaga ctttcaggga ggaagttctg
661 atgagctgta tgagtcggtg cattcgcaga ttttcacatt gccaaaggat accctgcttt
721 atcctggcca tgactacaaa ggtttcacag taagtactgt tgaagaggag gttgcgtata
781 atgctcgact aacaaaggat aaggaaacat tcaagaaaat tatggacaac ttgaacttgg
841 cctatccaaa gatgatcgat gtagccgtgc ccgcgaattt gctctgcggt attcaggatc
901 ctccaccatc caaggtctga gctgttccgg ctgaagcttt caagctgttg tgaactcacg
961 gtcaactcga gaagctcgca gctatgttgt acattaaata atctgttgtt aatttgtaag
1021 gcactacttg ggaacatttc cgcttcatga gatcaacggt aataataata aacagaggct
1081 agcttgcctc ttgtcttgtg ct
//