LOCUS AK104637 1851 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:006-310-D12, full insert
sequence.
ACCESSION AK104637
VERSION AK104637.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1851)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1851
/clone="006-310-D12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 121..1449
/db_xref="Osa1:LOC_Os04g42250"
/note="(Rice Genome Annotation Project) anthranilate
N-benzoyltransferase protein 2, putative, expressed"
/note="mapping to R04-TIGRv4S1-000696F (Chr.4: short
arm=24774908, long arm=24780406, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG96851.1"
/translation="MAITVRRSTMVRPAWETPRVRLWNSNLDLVVPRFHTPSVYFYRR
GPEGGGAPEGFFDGERMRRALAEALVPFYPMAGRLARDEDGRVEIDCNGEGVLFVEAD
APDASVDDYGDFAPTMELKRLIPAVDYTDDISSFSLLVLQVTYFKCGGVSLGVGMQHH
VADGMSGLHFINSWSDLCRGTQIAIMPFIDRTLLRARDPPTPSYPHVEYQPAPAMLSS
VPQSVTANKTTPPPTAVDIFKLTRSDLGRLRSQLPSGEGAPRFSTYAVLAAHVWRCVS
LARGLPSEQPTKLYCATDGRQRLQPPLPEGYFGNVIFTATPLAEAGKVTSGLADGAAV
IQEALDRMNDSYCRSALDYLELQPDLSALVRGAHTFRCPNLGLTSWVRLPIHDADFGW
GRPVFMGPGGIAYEGLAFVLPSANKDGSLSIAISLQAEHMEKFRKLIFEV"
BASE COUNT 382 a 514 c 512 g 443 t
ORIGIN
1 agctgctctc caccaagagc tgctccgccc ccctaccccg caacccgttg ctttgtgccg
61 cgcctcgctt tggtcttcat ccgcctcaga tctgattcgt tctaggttgg tctggggaag
121 atggcgatca cggtgaggcg gtcgacgatg gtgcggccgg cgtgggagac gccgcgggtg
181 cggctgtgga actcgaacct cgacctcgtg gtgccgcggt tccacacccc aagcgtctac
241 ttctaccgcc ggggccccga gggagggggc gcgccggagg ggttcttcga cggggagcgg
301 atgcggcgcg cgctggcgga ggcgctcgtg ccgttctacc cgatggccgg gcggctcgcg
361 cgcgacgagg acgggagggt cgagatcgac tgcaacgggg aaggggtgct cttcgtcgag
421 gccgacgcgc ccgacgcctc cgtcgatgac tacggcgact tcgcgcccac catggagctc
481 aagcgcctca tccctgccgt tgattacacc gacgacatct cctccttctc gctcctcgtg
541 ctccaggtga cctacttcaa gtgcggaggt gtctcccttg gagttggtat gcaacaccat
601 gtggcggatg gcatgtccgg tttgcacttt attaactcat ggtctgacct ctgccgagga
661 actcaaattg ccatcatgcc cttcattgac cgcactctcc tacgagcccg agatccacca
721 actccatcat acccacatgt tgagtaccag cctgccccag ccatgctgtc ctccgtaccc
781 cagtctgtta ctgctaataa gacaacacca cctccaactg ctgtggacat tttcaagctt
841 acccgctcag accttggtcg actgcgttcg cagctcccat caggagaagg tgcaccacgt
901 ttcagcacat atgcagttct tgctgcacat gtctggcgat gcgtatctct tgcacgtggc
961 ctgccttctg aacagcccac taagctgtat tgtgccactg atgggcgaca acggttgcag
1021 cctccacttc cagaaggtta ctttgggaat gtcattttca ccgccactcc acttgctgag
1081 gcaggcaagg tgaccagtgg gctggcagat ggagcagcag tcatccaaga ggcgctagat
1141 aggatgaacg atagctactg ccgctcagca ttggactacc tggagctgca gcctgattta
1201 tcagcattgg tccgtggagc acacactttc cggtgtccga acctcgggct caccagctgg
1261 gtgcgcttgc caattcatga tgcagatttt ggatggggaa gaccagtgtt catgggtcct
1321 ggtggcatcg cctatgaagg gctggcgttt gtcctcccaa gcgcgaacaa ggatggtagc
1381 ctatccatag ccatctcatt gcaggctgag cacatggaga agttcaggaa gctgatcttc
1441 gaggtgtaag cagactactt atgttatgtc agggagaagt tgtagagcta gagttctcag
1501 gtaaaatacc ttcaagtgag tcatgggggc tatgctcttg ctcctgttga gcaaattgtc
1561 tggccacgtt ctcttgtacc ttagcttgca aggatatttg gccatcacca cagccgtgtg
1621 acgatgtgag caaccaataa tgagctgttt ttttgttttc gtttaggata ggaatcaaca
1681 atgaagaaaa ggtgctgtat tctgtgaaac tacatggcag tgttgttctt accaaaaata
1741 catgacaagt gaattgggtc aagttattgc ctgttgtagc tcaagtcgat agatgaacat
1801 cattgtacag tacgaatgta cgatacgact ataacagcct gattgcctat g
//