LOCUS AK104574 1338 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:006-306-H11, full insert
sequence.
ACCESSION AK104574
VERSION AK104574.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1338)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1338
/clone="006-306-H11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 1..1059
/db_xref="Osa1:LOC_Os04g51580"
/note="(Rice Genome Annotation Project) leucine-rich
repeat-containing protein 40, putative, expressed"
/note="mapping to R04-TIGRv4S1-001027R (Chr.4: short
arm=30333976, long arm=30337790, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG96799.1"
/translation="MREMGEKRRRGHLNPAGFAGGLHDHEEKKNEEHKLDMSGMSMDA
LPHLTMSLGQVTILDLSNNNLESIPESIIARLLNVVVLDVRSNQLKSLPNSIGCLSKL
KVLNVSGNLLESLPNTIEECRALEELHANFNELTKLPDTLGFELHSLRKLSVNSNKLA
QLPSSTSHMTALRALDARLNCLRALPDGLENLANLEALNVSQNFQFLRELPYAVGLLA
SLRELDVSYNSIAALPDSMGCLTKLARFSAVGNPLVSPPMDVVEQGLDAMRAYLTARM
NGGDGKRKKKAWLPKLVKYSTFTARMTPGRTRVHENTEGLLMSDYRSLNGIASPRFLT
MLSPRRLFSPRRNSPKHC"
BASE COUNT 276 a 417 c 370 g 275 t
ORIGIN
1 atgagggaaa tgggagagaa gaggaggcgt ggacacctta accctgctgg ttttgcagga
61 gggttgcatg atcatgagga gaagaagaac gaggagcata agctagacat gagtggcatg
121 tccatggatg ccctcccaca cctcaccatg tctcttggtc aagtcaccat cttggatctc
181 tctaacaaca atcttgagag catcccggag tcaataatcg ctcggctgct gaacgtggtg
241 gtgctggacg tgcggtccaa ccagctgaaa tcgctgccca actccatcgg ctgcctctcc
301 aagctcaagg tcctcaacgt ctccggcaac ctgctcgagt ccctccccaa caccatcgag
361 gagtgccgtg cgctggagga gctgcacgcc aacttcaacg agctgacgaa gctgccggac
421 acgctggggt tcgagctgca cagcctccgg aagctgtcgg tgaactccaa caagctggcg
481 cagctcccct cctcgacgtc gcacatgacg gcgctcaggg cgctggacgc ccggctcaac
541 tgcctccgcg cgctccccga cgggctcgag aacctcgcca acctcgaggc gctcaacgtc
601 agccagaact tccagttcct ccgggagctc ccctacgccg tcggcctcct cgcctcgctc
661 cgggagctcg acgtcagcta caactccatc gccgcgctcc cggactccat gggctgcctc
721 accaagctcg ccaggttcag cgccgtcggc aacccgctgg tgtccccgcc catggacgtc
781 gtggagcagg gcctggacgc catgcgcgcc tacctcaccg cgaggatgaa cggcggcgac
841 ggcaagagga agaagaaggc gtggctgccc aagctggtca agtacagcac cttcacggcg
901 aggatgacgc ccgggcgcac cagggtgcac gagaacacgg agggcctcct catgtcggac
961 taccggtcgc tcaacggcat cgcctcgccg aggttcctca ccatgctctc gccgcgccgc
1021 ctcttctcgc cgcggaggaa ttcgcccaag cattgttgat atggccgatc cgatccgcct
1081 ctgcctactc tgtgtactgg ttgcctgttt gcttcagggg tgtacttcag atgatgtcat
1141 gctctcgtac ttaattagga tagatatgat gatgctgctg ctgctagctg ctaccgctgc
1201 tgcaaggtgt gtatatgttc tcatgaagag gtttgtagct tcgcatacag tatatagctc
1261 tacaattttt gtttgacgta aaaaatgctg tagtacaatc tagagcattg atgtacataa
1321 caagggtaat tttcttcc
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