LOCUS AK104343 1342 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-034-B09, full insert
sequence.
ACCESSION AK104343
VERSION AK104343.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1342)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1342
/clone="001-034-B09"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 128..988
/db_xref="Osa1:LOC_Os05g08980"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R05-TIGRv4S1-000249F (Chr.5: short
arm=4949642, long arm=4954519, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG96608.1"
/translation="MAMVQAGMGLTRVVVLIGAGMAGSVVLRNGRLSEILGELQEILD
KGEKGKDGEGGGGADMTDALTRQVRNLAMEVKQLASSRGSITVLNGGSGQTGVSGLIV
PAATVGALGYGYMWWKGISFADLMYVTKRNMANAVSSMTKHLEQVQTSLAAAKRHLTQ
RIERLDDKLDQQKALSGQIRDDVTDARLKLENIGSEIKNIKQLVWGLDEKMDSMEAKQ
NFSCAGVMYLCQFIEQNGGKLPERLEGSKMAGKRFGSQNLIQGLQLAIETGNFDKETF
NALKNNSDSR"
BASE COUNT 334 a 311 c 353 g 344 t
ORIGIN
1 ggctcgaccc ctcctccacg cctccgcctc cgcctccgcc tccacgacgt agcccagggc
61 ggctagggtt tcggtttcct ccgccgccgc cgccacctcc tcctcctcct cgtgcgcggc
121 ggcgaccatg gcgatggtgc aggccggcat gggcctcacc cgcgtcgttg tcctcatcgg
181 cgccgggatg gccggctccg tcgtcctccg caacggccgc ctctccgaga tcctcggcga
241 gctccaggag atactggaca agggggagaa ggggaaagac ggagaagggg gcgggggcgc
301 cgacatgacg gacgcgctca ctagacaggt gcgcaacttg gctatggagg ttaaacaact
361 tgcttcttcc cgtggatcta taactgttct taatggaggt tctggtcaaa caggggtgtc
421 aggtttgata gtacctgcag caactgttgg agcactcggt tatggttaca tgtggtggaa
481 gggcatctcc tttgcggacc taatgtatgt gactaagcgt aacatggcaa atgctgtttc
541 cagtatgact aagcatctgg agcaagtgca aacctctctt gctgctgcta aaaggcattt
601 gactcagcgt attgaaaggt tggatgataa attggatcag caaaaggcgc tttctggaca
661 aataagagat gatgttactg atgcacgact gaagcttgag aatattggtt cagaaattaa
721 gaacatcaaa caattggttt ggggtctgga tgaaaaaatg gattcgatgg aagccaaaca
781 gaacttttca tgtgctggtg tgatgtacct ctgccaattt attgagcaaa atggtggaaa
841 gctgccagaa cgcctggaag gctcaaaaat ggctgggaag cgttttggaa gccaaaatct
901 catacagggg ttgcaactgg ccatagaaac agggaatttt gacaaggaaa cgttcaatgc
961 acttaagaac aactctgatt caagataaac aggtccaacg tctgccaaag taatttttgt
1021 cagggcggta tccgagggca tctcatcttt ccagaccacg ccctccattg aaatgctgta
1081 aaggataatt tcttactagt ttaacatgta aaaagttcca gccttttcaa gttttctgct
1141 tgcagaaggt gctgctacat tttaaagctt gtgcaatact tagtggttag ggttttttta
1201 ccgtgctatg ctggcaccgc ttgtggtttc agaatttcag gcaacacttt gccgtaaata
1261 aaaggacaac acgtgtggtt cgtgtgatgt tttcaaaccc atttcatgtt ttatttgtaa
1321 tatatgctac aagcttacgt ag
//