LOCUS AK104312 1686 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:001-018-G10, full insert
sequence.
ACCESSION AK104312
VERSION AK104312.1
KEYWORDS oligo capping; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1686)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1686
/clone="001-018-G10"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 248..1462
/db_xref="Osa1:LOC_Os01g46400"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R01-TIGRv4S1-001060R (Chr.1: short
arm=26728468, long arm=26730324, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG96590.1"
/translation="MKLHFVLRFLFGPVPVYFSALAILILLTNAQYFGLVGVTVPRAT
KLASSAPVVSVMKYCDIFRGEWVPDSDAPYYNHKTCYMIQEHQNCLKYGRPDLEFLKW
RWRPSGCELPRFDPVQFLQFNRHKSLAFVGDSLARNHMQSLLCLLSQVAYPKDMSANP
TTQNKVYHYRGYNFTVSMFWSPFLVKAREPDHDGPAHTGHWSLYLDEPDQSWVSEISR
FDYVLVSAANWFSRPSLFYEKRRLVGCSFCSRQYGVPDLTLYYSQRRAWRVALKAIND
LESLRGRVIVRMLSPMSHFENGTWDQGGNCKRTQPLRSNETVMEGRDLHFYTAQMEEY
RAAEKVAEAKGRRMMLMDATAAMLMRPDGHPSRYGHLPNQKVQLYNDCIHWCLPGPID
IWNDMLFQMLLV"
BASE COUNT 323 a 516 c 506 g 341 t
ORIGIN
1 agaagataca gcatgcgagc aagcaagagc ggttttagcc atcaaagccg aaagccatcc
61 gggcattcgc tctcccctcg ctgctagcta gctttgcttg ctaatctaga gctaagcacc
121 aaatggtcct gattgttctt ctcgcttctg aattgttgtg acctgtaact acaaaggcat
181 agttaggtag atatagaaag agggggggag aggggccgga ggccggagcg gcgggggcgg
241 cggcgagatg aagctccact tcgtgctcag gttcctgttc ggccccgtgc cggtgtactt
301 ctcggcgctg gccatcctca tcctgctgac gaacgcgcag tacttcgggc tggtgggcgt
361 caccgttccc cgcgcgacga agctggcgtc gtcggcgccg gtggtgagcg tgatgaagta
421 ctgcgacatc ttccgcggcg agtgggtgcc ggactccgac gcgccctact acaaccacaa
481 gacgtgttac atgatccagg agcaccagaa ctgcctcaag tacggccgcc ccgacctcga
541 attcctcaag tggcggtggc gcccctccgg ctgcgagctg ccccgcttcg accccgtgca
601 gttcctacag ttcaaccgtc acaagtcgct cgccttcgtc ggtgactcgc tggctcgcaa
661 ccacatgcaa tccctgctct gcctcctctc ccaggtggcg tatcccaaag acatgtcggc
721 gaacccgacg actcagaaca aggtgtacca ctacaggggg tacaacttca ccgtcagcat
781 gttctggtcg ccgttcctgg tgaaggcgcg tgagcccgac cacgacgggc cggcgcacac
841 gggccactgg agcctgtacc tcgacgagcc cgaccagtcg tgggtgtccg agatctcgcg
901 gttcgactac gtgctggtgt ccgccgccaa ctggttctcc aggccgtcgc tcttctacga
961 gaagcggcgg ctggtcgggt gcagcttctg cagcaggcag tacggcgtgc cggacctgac
1021 gctctactac tcgcagcgcc gggcgtggcg cgtggcgctg aaggcgatca acgacctgga
1081 gagcctccgc gggcgggtga tcgtgcggat gctgtcgccg atgtcgcact tcgagaacgg
1141 gacgtgggac cagggcggca actgcaagcg gacgcagccg ctccggagca acgagacggt
1201 gatggagggg cgggacctgc acttctacac ggcgcagatg gaggagtacc gcgccgcgga
1261 gaaggtcgcg gaggccaagg gccggcggat gatgctcatg gacgccacgg cggcgatgct
1321 gatgcggccc gacggccacc ccagccggta cggccacctg ccgaaccaga aggtgcagct
1381 ctacaacgac tgcatccact ggtgcctgcc aggccccatc gacatctgga acgacatgct
1441 cttccagatg ctcctcgtct aacgcgatcg atcgccaatt cgccatcggt aaatgcgact
1501 tctactgcac agacaggatt gctcttgctg ttgtttcaaa gcagttttga caaggattta
1561 ttcgaacttc cccaatagat tcttttttct ctctcttttc ccttcatttc ctttcatttt
1621 tcgtttatgc tgacgcgaat ttttaatgga tcgtcaccgg aaagagtgaa cgaaagtgtg
1681 cctccg
//