LOCUS AK103876 1575 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033149M20, full insert
sequence.
ACCESSION AK103876
VERSION AK103876.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1575)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1575
/clone="J033149M20"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1575
/db_xref="Osa1:LOC_Os08g10470"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R08-TIGRv4S1-000265F (Chr.8: short
arm=6148819, long arm=6151351, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 292 a 483 c 461 g 339 t
ORIGIN
1 gcacttctcc caccgccgcc gccgccgccg ccgaggaaga agctctgctc cgccatggcc
61 ggcgacgcgc tgcgtgcggc cgatctcccc ggccgaggac gcgggctcct cgcggcgcgc
121 agcatccggg agggggaggt catcctcacc gagcagccgc tgctcctcta cccggcctcg
181 ctcgcctccc tcccctcctt ctgctccgcc tgcttccgct ccctctccgc cgccgcatcc
241 ccctgcccct cctgccgcgc cgcgggattc tgctccccgt cctgcgccgc cgcctcccac
301 ccgcgcctcc tctgcaccgc gctctccggc ggcggtggca acggaaacct cgcgtccgcc
361 gccgagccgc accaggagcc gctcctcttc cttctctccg cctactccct cccggagccc
421 tcactccgca tgctcctctc cctctcctcc gccgcaacgc cgcccccgag cgaccaggac
481 ccggggagcc tgcacgccat ggtggcggcg ctggtgccgc cgcagatgct tccgccaggg
541 ttctcgccgg acctcacggc ggcgctcctc tccaaggacc ggaccaacag cttctccatc
601 atggagccct accgccccga ggtgccgcag cctctccgga aggcgagggc ctacgccgtg
661 tacccgcggg cgtcgctgct gaaccatgat tgcctcccca atgcttgcca tttcgattac
721 gccgataggc cgggtcccgg gaacaccgac attgtggtgc gagctcttca cgacatcacc
781 gaggggaggg aggtgtgcct cagctacttc gcggccaatt ggcagtacaa ggatcggcag
841 cagaggttgc tggaggacta tgggttccga tgcgagtgtg agcggtgtca ggtggagagc
901 aagtggaagc aagatgatga tagcgatggc ggcgatgggg atgacaccat ggaagaggag
961 gaagaggatg gtaatggtgg agaaggtggt gatgatggga tggagcagga ggagggggat
1021 ggtggtagcg atagcgatga tgatttcccg cactcatact tctttgtaag gtatctgtgt
1081 aaccatggtg aatgctatgg catgcttgcg ccacttccgc ccttgccaaa cggtgagccg
1141 tcccatgtgt ttgagtgcaa tgtctgtggg aacctgaaga acgaagatga aattgatgct
1201 cctgatggtg gtgattccag catggcggat taggatgagc taagcataac cgatctgctt
1261 gctgcttctt ttggtgggag ctcataacac tttggtggta ggacttggga gtacttctgt
1321 aaactggttg gagttttgac aaaaacggga gtttaataca cctaaatatg gagagatgta
1381 tgaacagaac aacattcatt gactgaatgt ggaactagca atccttcttg tactcagcaa
1441 cgtatatatg aatgtgtatc cgttgtaggg agtcctgctt gttctgtaca atttctaatg
1501 ctcccccttt atctagaatg gtgatttaga cttgagaaat ttatgcagtc agaagctgat
1561 ctcctgtgat acttg
//