LOCUS AK103840 1833 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033148I08, full insert
sequence.
ACCESSION AK103840
VERSION AK103840.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1833)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1833
/clone="J033148I08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1833
/db_xref="Osa1:LOC_Os07g28840"
/db_xref="RAP-DB:Os07g0471100"
/note="(RAP Annotation release2) Nuclear protein SET
domain containing protein"
/note="(Rice Genome Annotation Project) SET domain
containing protein, expressed"
/note="mapping to R07-TIGRv4S1-000532F (Chr.7: short
arm=16885206, long arm=16888668, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 478 a 418 c 429 g 508 t
ORIGIN
1 gtgtagtgac tagtgggctt tacacagcca aataattcag attaccgtaa aacctccgcc
61 cccagctagc gggctggtgt ttcctccgcc gccgccgccg caaatggagg ccctcctccg
121 gtgggcggcg gagctgggcg tctccgactc cccgtccgcg ccctccccct cctcctgcct
181 cggccgctcc gtcctcatcg ccgacttccc cgacgccggc gggaggggct tggcggcggc
241 gcgggacctc cggcgcggcg agctggtgct gcgggcgccg cgcgccgccc tgctcaccag
301 cggccgcgtc atggacgatg accccaggat cgcctcctcc gtcgccagcc acctcccccg
361 cctcccctcc gtccagaccc tgatcatatg tttgttgtct gaagtgggaa aagggaagag
421 ttcaaattgg tatctatatt tgtctcagct gccctcctac tacactatct tggctacctt
481 caatgatttt gaaactgaag ctctccaagt tgatgaggct atttgggttg ctcaaaaggc
541 tcttcgtgga ataagatcag actgggaaga agcaacacca ctgatgaaag ggttgggatt
601 taaacctaag ctttgatgtt taaatcatgg atctgggctt ttgcaacggt atcttcaaga
661 acattgcata tagcatggga tgatgctggt tgtctatgtc ctattggtga tttgttcaat
721 tatgctgctc ctaatgatga caattcatca acggatgaag atagagatga tatgatgcat
781 caggagacaa ataagatgtt ggaccagaca gattttgatt catctgagaa gttgacagat
841 gggggatatg aagatgttaa tgaataccgt ctgtatgctc ggaaaagata tagaaaagga
901 gagcaggtac ttctggctta tggaacgtat acaaacttgg aacttcttga gcattatggt
961 tttcttttgg gtgagaaccc taatgagaaa atctacattc cattagattt ggatttatgc
1021 atgatcggtt cttggccaag agattccttg tatattctgc caaatggaca tccctcattt
1081 gcattgctgt gtgcattaag gctttggaca actcccagaa atcgtcggaa agccttaagt
1141 catcagatct actctggatc attgttatct gttgaaaatg agctggagat tctgaaatgg
1201 ttggtcaaga agtgcaagga aactttgcag caattaccta cgactataga atttgatgat
1261 aatttgctcg tccttttatg caagctacag aacagcacta gctgcataac agaaatgaac
1321 cggtcaatct ttgagcaaga atttgctcca ttcttcagat ttcatggctt caagctggat
1381 tgttctatac acagtaaact cccagttcgt cttctacgat ccctggaaag atggggatta
1441 gctgtccagt ggagatgcaa ctacaaaaga accctaacca agtgtattgt gcactgtaaa
1501 agtttagttc acgagctttc gttgcaacaa aatcaacaat agctcaaaga ttcaagctaa
1561 ctatgttctt tagaatgcag aagttcttga tacaacaaaa atcaacaata gctcaaagat
1621 tcaagctaat tatgtttttt taatgcagaa gttcttgata catttttgct taacagcatg
1681 tcaaattgtc aacactcgat agcagggcga ggtgctttca tagttccatg catcacactt
1741 tttggggttg catagtttaa gcataacaag cgttctgtgg aatgccttct gtggaatgcc
1801 gctgagatac tgataattga ttatcaggca tgc
//