LOCUS AK103797 1568 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033145P15, full insert
sequence.
ACCESSION AK103797
VERSION AK103797.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1568)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1568
/clone="J033145P15"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1568
/db_xref="Osa1:LOC_Os10g37640"
/db_xref="RAP-DB:Os10g0520700"
/note="(RAP Annotation release2) Zinc finger, HIT-type
domain containing protein"
/note="(Rice Genome Annotation Project) HIT zinc finger
family protein, expressed"
/note="mapping to R10-TIGRv4S1-000586R (Chr.10: short
arm=19811000, long arm=19815184, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 393 a 373 c 422 g 380 t
ORIGIN
1 gccgcggcgc acaccggaat ccaccgccga cgctccggcg ccaccgaggg agggggtgag
61 gaacgcgggg gagaagcgtc gtaggcgagg tgccggcgat ggagagggaa gtcgtggtct
121 ccgaggacgc ggccgcctcc tcctcctcct cctcctcctc cgccgccgcc gcctcgttct
181 ccctcgcgga aaccagggtc atctgccgcg tgtgccagaa gcagttcgcg cagtacactt
241 gcccccgttg taacgcccgg tactgctcgc tcccgtgcta caaggggcat agtgttcagt
301 gcactgaatc cttcatgcgt gagaatgtta tggatgagct taagcagatg caacctgaag
361 atgaatcaaa gaagaagatg ttagacatac ttaaaaggtt ccacttggaa gaagaagata
421 tggattcaga aggcgaagat gagtcaattc tgtcagagga gcttattcaa aaagttatgt
481 ctggagatga gatcaagctt gaagacctct ctgatgatga aatcaaacga tttcgtcaag
541 ctctggcttc aggtgaactc agcaagatga tcgagccatg gacaccatgg tggaaaaaac
601 cttccgctag atcgatttcc ctcagtccag atggaagcca gcttatcaga caagtgagtg
661 tagaagacac tgatacgtca gatccaatgg ctgacccaga gtctagcatc agtgaaatcc
721 cagaagggcc agaatctgct ctcccgtcac tcgaacagct aaccagagcg gagccatctc
781 cgctgcttgc ggttcacttg gttgatatac tgtacagtta ctgcttcaca cttcgcctcc
841 acaatggcga ttggcgctct gatccttttg gtgcctctac tgttgcgttg tctgtgtcaa
901 aagtcatggg ggaggatgct aaacctgaga cagtatctga agccctcacg gcatgtatag
961 aggagacatg ctcaccggct tacaggcaca ccggaggttt caggtttgct atagctctcg
1021 tggatgatat catcagcctt ctcacgttag gaggcaatgc gcttgtttgt gccctctgtg
1081 acttccgcag gctcattcat atcggtgaga ggatgctcaa ggcagagaaa ttgggcaagg
1141 cggagcgatc acggagcacc caaaagcttc gtgccgcaga taggaagttg tacttcatga
1201 catgctgggt tcatgagcaa ccaaatgagg catggtcgtc tttagctcgc ctcgttgagg
1261 tgcaggaagc atctctggag gagttggatt gcgggagtca atttcaaagg gctggtagaa
1321 agaacgatgc ccaatccaag gttcttattg aggagatttg agcgtgagaa tgtattgatg
1381 caagtgatac tcataatctt cttaccccta tatcagctgt atcatgtatg gctgtataat
1441 ctttgttgta aagaacttcg gatgttactt ccccatgagt ttctgatgtc aaatctgata
1501 tgttaaagga gttgtatgca attctgaaat cctgatatga aagccatatt ggcagaattc
1561 agatgcct
//