LOCUS AK103776 2338 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033143P19, full insert
sequence.
ACCESSION AK103776
VERSION AK103776.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2338)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2338
/clone="J033143P19"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2338
/db_xref="Osa1:LOC_Os01g48060"
/note="(Rice Genome Annotation Project) auxin response
factor 3, putative, expressed"
/note="mapping to R01-TIGRv4S1-001110R (Chr.1: short
arm=27828410, long arm=27833502, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 605 a 522 c 597 g 614 t
ORIGIN
1 ggtgctgttt gcaggcggac gccgcgacgg acgaggtgta cgcgcaggtc tcgttggtcg
61 ccgacaacga ggaagtggag aggcggatgc gggagggaga ggacggcgcg gcctgcgacg
121 gcgagggcga ggacgccgtg aagcggccgg cccggattcc ccacatgttc tgcaagacgc
181 tcacggcctc cgacaccagc acgcacggcg gcttctccgt gcctcgccgc gccgccgagg
241 actgcttccc gccgctggac tacagcctgc agaggccatt ccaggagctc gtggcaaagg
301 atctgcacgg cacggaatgg aggttcagac atatctatcg aggccaacca cggaggcacc
361 ttttaaccac tggatggagc gggtttatca acaagaagaa gctagtatct ggggatgcag
421 tgctattcct cagaggtgaa gatggagagc ttcgattggg agtgcgccga gctgctcagc
481 taaaaaatgc atctcctttt cctgcacttc ataaccagat ctcaaatact agtagtctta
541 gtgaagttgc acatgctgtg gccgtgaaaa gtatttttca catctactac aatcccagtt
601 gtactcacag gttaagtcag tctgagttca ttataccata ttggaagttt atgagaagct
661 tcagtcaacc cttttctgtt ggaatgcgat tcaaattgag atatgagagt gaggatgctt
721 ctgaaagaag gcgtactgga ataataattg gaagcagaga ggcagatcca atgtggcatg
781 gttcgaagtg gaaatgttta gtggtgaaat gggatgatga tgtggagtgc cgtcggccta
841 atggggtatc tccttgggag attgagctta gtggatcagt ttcaggatct catctgtcca
901 ctccccattc aaaacggctg aaatcatgct tcccccaagt taatccagat attgtgcttc
961 caaatggaag tgtttcttca gattttgcgg agtctgccag attccacaag gtcttgcaag
1021 gtcaagaatt gttgggttta aaaactcgtg atggtactgt taatacagct tctcaggcga
1081 ctgaggcaag aaattttcag tacactgatg aacgaagttg ctctatcaac atgagtaaca
1141 atatcttagg ggttccgaga cttggggtga aaactccaag tggaaaccct gggttttcct
1201 accattgctc aggctttggg gaatctcaaa gattccaaga ggtcttgcaa ggtcaagaag
1261 tgtttcgtcc ttaccgagga gggactttgt ccgatgcctg tataagaggt tctggcttcc
1321 gtcaacctga tggcaaccat gcacctggtg cagcatttaa atggcttgca ccacaaggat
1381 gtgatcatca tgggataacc acatcagttc tgccgcaagc atcctctcca tcatctgtct
1441 taatgtttcc acaaactagt tcaaagatgc ctggccttga atacatatac ggatgcctgg
1501 atagaaatga gaatagccga cattttaaga ttggacctac acaagatatg acaagaactg
1561 atcaaacatt acgactctgg cctcatctta tttcaggcaa agtgctagat gagtgtacga
1621 gaaatgagaa gctgcactct ccagtcagtg gtgctgagca tgaatcaaat aacaagtgtc
1681 ttaatacaaa tggctgcaaa atctttggta tatcattgac tgaaaaggcc caagcaggcg
1741 atgaagtgga ttgtggcaat gccagttatc attctcggct ccagtcttta aaaccacaga
1801 tgccaaaatc attgggcagc agttgtgcca cggtccatga acaaaggcct gttgttggca
1861 gggtcgttga tatttcagca gtgaatacga tgatctgata catttactgt atccagggag
1921 tatgcttgca gaaataggga ccaacattag tatcatactc actggtgctg aggacacaac
1981 ttccattctg gctatctcgt ccctctacgt gcttgttgcc tcaacttcag catttccaca
2041 ggctgtgcta ccgcatccag gatgatgaca ggggaaatgc agatgataca cgaaggatgc
2101 ttgtcaagtt tgttgtaatg cacttctaag ttctaagctt tgaacctctt aacgttgctc
2161 ctattttaag ctcccgttgt aatcggcatt tatgttgcct gacctacttg catatttttc
2221 aatttgtccg ttaagacagc ccttttagag ggcttgctta tgttagcaac ccttaatttc
2281 caaattccaa gtatggcgac cgttcgaggg gtttgtttgc tcctgggacg acatcggt
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