LOCUS AK103745 2191 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033138N11, full insert
sequence.
ACCESSION AK103745
VERSION AK103745.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2191)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2191
/clone="J033138N11"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 44..1945
/db_xref="Osa1:LOC_Os09g30400"
/note="(Rice Genome Annotation Project) OsWRKY80 -
Superfamily of rice TFs having WRKY and zinc finger
domains, expressed"
/note="mapping to R09-TIGRv4S1-000546R (Chr.9: short
arm=18495974, long arm=18498924, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG96240.1"
/translation="MASSSDHGSLMEDWMPPPTPSPRTLMSSFLNEDFVSGSFSNIFS
DHESNKPQDQFERNRELVDLSKEVPSQFARPAFQRDASLDHSLVSPTQRSNSHGGLAE
RRAARAGFSVPKIDTSRGGSSTVIRSPVAIPPGLSPTTLLESPVFLYNAMAQPSPTTG
TLPFLMASNAKSTIPSATKMDEDCTFGNDTFSFQPHVGSRRPNFSAAEKGPNACHQNQ
SLSNIHQRESSLQSSFTAVKDITDEKNIKTKTSDSMFGDNHSSDEQDDETNQNGENSM
PPPNHRSGVPLSHTNDPEVNVLENRGSQTCHNSASLWDNAKNDCLQDVQSEVIETRTA
ACLPVSTNCDTSIMESQDAVDVSSTLSNEEDDRATHGTASIECNGDGDETDSKRRKLD
ALTAATAAITTTSNIDMGAAASRGVREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGN
PNPRSYYKCTHQGCSVRKHVERASHDLKSVITTYEGKHNHEVPAARNSGHGSSGSGNA
PSAPQSNGSQRRQEQGQASFSQFGGAAPFSSFVLPPRNQFGPSASNFPFGMVPPGMAI
PMPSLGSLAPAKMAGHPSTMQGYQGLMIPEGEMKTEPMSQLGFPAVNQSSSSFQQMMN
RPPSFGPQM"
BASE COUNT 615 a 529 c 511 g 536 t
ORIGIN
1 gcctatctct tactacttga gttaaacttg attgctctgt cgcatggcca gcagtagcga
61 ccatggatcc ctcatggagg actggatgcc accacccaca cccagcccga gaacactcat
121 gtcaagcttc ttgaatgaag attttgtctc tggttcattt tccaatattt tcagtgatca
181 tgagagcaac aaaccccagg atcagtttga gagaaacaga gagcttgtgg atttgagtaa
241 ggaagtgcct tcccaattcg caagacccgc attccagagg gatgcttccc tggatcatag
301 cttggtcagt cctacacaga gatcaaactc gcatggtggt ttggcagagc gcagggctgc
361 gagggctggt ttcagtgtcc cgaaaatcga tacatcccgt ggtggttcat ccacagtaat
421 tcgatcgccc gtggcaattc caccaggtct tagtccaaca acacttctcg agtcaccggt
481 tttcctttac aacgcaatgg cacagccttc tccaaccact ggcacactgc catttttgat
541 ggcttcaaat gctaagtcaa caataccgtc agctaccaag atggacgaag attgcacatt
601 tggcaatgac actttctcct tccaaccgca tgtagggtcg agacggccaa atttctccgc
661 tgcagaaaag ggtcccaatg cttgtcacca aaaccaatcg ctgtcgaata tccatcagcg
721 ggaatccagt cttcagtcaa gctttactgc agtcaaagat atcactgatg aaaaaaacat
781 taaaacaaag acatctgact ccatgtttgg tgataaccac tcttctgatg aacaagatga
841 tgagactaac caaaatggag aaaactctat gccacctccg aaccaccgtt caggtgtccc
901 tctgtcacat accaatgatc cagaagtgaa tgtcctagag aaccgcggtt cacagacatg
961 ccataactct gcatccttgt gggacaatgc caaaaatgat tgccttcaag atgttcaaag
1021 tgaagttatt gaaacaagaa cagctgcttg tcttccagta tcaaccaatt gtgatacatc
1081 tatcatggag tcccaagatg cagttgatgt gtcgtcaaca ctatctaatg aggaggatga
1141 tagggcaacg catggcacgg cttctataga gtgcaacggg gatggagatg agactgattc
1201 caagagaagg aagctggatg ctttgacagc tgcaactgct gctattacca ccaccagtaa
1261 cattgacatg ggagctgcgg catcgagagg tgtccgggag cctcgtgttg ttgttcagac
1321 aacaagtgag gttgacatcc ttgatgacgg ttaccgctgg cgcaagtatg gacagaaggt
1381 tgttaaagga aatccaaacc caaggagcta ttacaaatgt acgcaccaag ggtgttcggt
1441 gcgcaagcac gtggagagag catcgcatga tctaaaatcc gtcatcacga cgtacgaggg
1501 gaagcacaac catgaagttc cagctgccag aaatagtgga catgggagct ctggatctgg
1561 aaacgctcca tctgcaccgc aatctaacgg ctctcagcgc aggcaagaac aagggcaagc
1621 cagcttcagc cagtttggtg gcgcggctcc cttcagctcc ttcgttctcc caccaagaaa
1681 ccaatttgga ccatcggcga gcaatttccc ctttgggatg gtcccgccag gcatggcgat
1741 tcccatgcca tctctagggt ctcttgctcc agcaaagatg gctggtcatc catccaccat
1801 gcagggctac caggggctca tgattccgga aggagagatg aagacagagc ccatgtcgca
1861 gctcggcttc cccgcggtaa accaatcttc atcatccttc caacagatga tgaacaggcc
1921 tccatcattt ggacctcaga tgtaaataat aatattaaag aaagaaaaga aaatgataga
1981 tgtgcttcag cttctataca tggtagcaat gctacaacat agctttgttg ttctagcttt
2041 tacctgttat tttttctttg ggcttttatt ttttggaagc aaagaatgca gaagatgtta
2101 cccgttttgt ttatgttgta attggaaaaa aaaggtggtg gtagtgttca ggacaaaagg
2161 caaaatcatt caattggaag tgctgatggt g
//