LOCUS AK103730 1446 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033138E20, full insert
sequence.
ACCESSION AK103730
VERSION AK103730.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1446)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1446
/clone="J033138E20"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 55..1242
/db_xref="Osa1:LOC_Os05g07210"
/db_xref="RAP-DB:Os05g0164800"
/note="(RAP Annotation release2) Similar to Zinc
transporter 6, chloroplast precursor (ZRT/IRT-like
protein 6)"
/note="(Rice Genome Annotation Project) ZIP zinc/iron
transport family protein, expressed"
/note="mapping to R05-TIGRv4S1-000192R (Chr.5: short
arm=3785992, long arm=3788773, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG96232.1"
/translation="MSGTGCFPAGEMAAVARVCRDGAAAARLKTGSLLAILVASAVGI
CLPVALTGAFRGKAGYARGLLLVKCYAAGVILSTSLVHVLPDAHAALADCAVATRRPW
RDFPFAGLFSLVGALLALLVDLSASSHLEAHGHHQHAEEGESPPPPPPTHQPYAPIPT
TKKSPVFELSGEMSPKKRAHSDDTDRDDVALFGAKSAVRSDEVVVAPRVGCHGHHDVV
EVGEEGGGGEEEEARRKQKMVSKVLEIGIVFHSVIIGVTMGMSQDVCAIRPLVVALSF
HQVFEGMGLGGCIAQAGFGIATVGYMCVMFSVTTPLGILLGMAIFHMTGYDDSSPNAL
IIEGLLGSLSSGILVYMALVDLISLDFFHNKMMSSSNKLKKVSYVALVLGSASMSILA
LWA"
BASE COUNT 265 a 437 c 433 g 311 t
ORIGIN
1 tgctcgctcg ccgtcgccgt cgcaggagac tccggcgagc gcgttgacgt ggccatgtcg
61 gggacggggt gcttcccggc gggggagatg gcggcggtgg cgagggtgtg ccgggacggg
121 gcggcggcgg cgaggctcaa gacgggctcc ctgctcgcca tcctcgtggc gagcgccgtc
181 ggcatctgcc tccccgtggc gctcacgggg gcgttccgcg ggaaggccgg gtacgcgcgc
241 ggcctcctcc tcgtcaagtg ctacgccgcc ggggtcatcc tctccacctc gctcgtccac
301 gtcctccccg acgcgcacgc cgcgctcgcc gactgcgccg tcgccacgcg ccgcccgtgg
361 cgggacttcc ccttcgcggg cctcttctcc ctcgtcggcg cgctcctcgc cctcctcgtc
421 gacctctccg cctcctccca cctcgaagcc cacggccacc accagcacgc ggaggagggg
481 gagtcgccgc cgccgccgcc gccgacccac caaccctacg ccccaatccc caccaccaag
541 aagtcccccg tcttcgagct ctccggcgag atgagcccca agaagcgcgc gcactcagac
601 gacacggacc gggacgacgt ggcgctcttc ggggccaaga gcgcggtccg gagcgacgag
661 gtcgtcgtcg ccccccgtgt cggctgccat gggcaccacg acgtggtgga ggttggggag
721 gaaggaggag gaggggagga ggaggaggcg aggaggaagc agaagatggt gtccaaggtg
781 ctcgagattg ggatcgtgtt ccactcggtc atcatcgggg tcaccatggg gatgtctcag
841 gatgtctgcg ccatccggcc gctcgtcgtc gcgctctcct tccaccaggt gttcgaagga
901 atgggcctcg gcggctgcat tgcgcaggca ggttttggga ttgcaacggt gggttacatg
961 tgcgtaatgt tctcggtgac aacaccattg ggaatacttc ttggaatggc aatattccat
1021 atgactggct atgatgatag cagtccaaat gccctaataa tagaagggct ccttggctca
1081 ctttcttctg gaatccttgt ctacatggca cttgtcgatc tcatttctct tgatttcttc
1141 cacaataaaa tgatgtcatc atctaataaa ttgaaaaagg tctcttatgt cgcattagtg
1201 cttggatctg catccatgtc tatattagct ctctgggcat aggtcatagg tgcaaccaga
1261 gtgaaatacg gtgtattgat cctttgtagg aagaaatgga tgttttggga gtcaggactt
1321 ccctcatgta aattaaactt ccacataatg ggaaacttaa aaattcttga atgccttttg
1381 atactgtgag ccattttcgt ctcctgatta ccatggacaa tcaaaacgta cagtgattta
1441 tctttc
//