LOCUS AK103602 1932 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033133G01, full insert
sequence.
ACCESSION AK103602
VERSION AK103602.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1932)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1932
/clone="J033133G01"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 55..1563
/db_xref="Osa1:LOC_Os02g49326"
/db_xref="RAP-DB:Os02g0725200"
/note="(RAP Annotation release2) Rubisco
methyltransferase family protein"
/note="(Rice Genome Annotation Project)
ribulose-1,5-bisphosphate carboxylase/oxygenase small
subunit N-methyltransferase I, putative, expressed"
/note="mapping to R02-TIGRv4S1-001279F (Chr.2: short
arm=30138390, long arm=30142824, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG96165.1"
/translation="MATAAALALHTQFRPPRSPRRLRQHLALPSGVLIRSPVRASAAS
ASASAPAQREAAAAGVPWGCEIESLESAVSLERWLTDSGLPEQRLGIQRVDVGERGLV
ALKNIRKGEKLLFVPPSLVITADSEWGCPEVGNVLKRNSVPDWPLIATYLISEASLES
SSRWSSYIAALPRQPYSLLYWTRPELDAYLVASPIRERAIQRITDVVGTYNDLRDRIF
SKHSDLFPEEVYNLETFRWSFGILFSRLVRLPSMDGRVALVPWADMLNHSPEVETFLD
YDKSSGGIVFTTDRSYQPGEQVFISYGKKSSGELLLSYGFVPKEGTNPNDSVELLVSL
NKSDKCYKEKLQALKRNGLSEFESFPLRVTGWPVELMAYAFLVVSPPEMSQRFEEMAV
AASNKSPSKPGLNYPELEEQALQFILDCCESNIAKYTKFLEGSSGSLQLSTNSKQANR
TLLLKQLARDLCISERRILYRTQYILRRRLRDMRGGELKALSLFNGLRKLFK"
BASE COUNT 471 a 462 c 496 g 503 t
ORIGIN
1 gggataagcc ccccgcgccc gcacacaacc gcaccgccat ttcgcggttc cgccatggcc
61 accgccgcgg cgctcgcgct ccacacgcag ttccggccgc cgcgctcgcc tcgccgtctc
121 cggcagcatc tagccttacc ctcaggagtc ctcatccgat cccccgtccg cgcctcggct
181 gcgtcggcgt cggcgtcggc gccggcgcag cgggaggccg ccgccgcggg agtcccgtgg
241 ggctgcgaga tcgagtccct ggagagcgcc gtgtcgctgg agaggtggct caccgattcg
301 gggctccccg agcagaggtt ggggatacag cgggtggacg tcggtgagcg cggcctcgtc
361 gcgctgaaga acatccgcaa gggggagaag ctgctcttcg tgcctccctc cctcgtcatt
421 acagctgact cagaatgggg ctgccctgag gtggggaatg tgttgaagag aaattctgtg
481 ccggattggc cgcttattgc tacctacctt ataagcgaag ctagtttaga gagttcgtcg
541 aggtggagca gctacatagc ggcgttgcca aggcagcctt actctctgtt gtactggact
601 aggcctgagc ttgatgcata cttggtggct tcgccgatca gggaacgcgc aattcagagg
661 atcactgatg tggtcggaac atacaatgat ctccgtgaca gaatattttc taagcattca
721 gatttgttcc ctgaggaggt ttacaactta gagacgttta gatggtcctt cggcatcctc
781 ttctcacgcc tggttcgatt gccatcaatg gatggaaggg ttgcactagt tccttgggca
841 gatatgctta accatagtcc tgaggtggaa acattcttgg attatgataa atcctcaggg
901 ggaatagttt tcactaccga tcgttcatat caaccaggtg agcaggtgtt tatatcctat
961 ggcaagaaat ccagtggcga gctattgctt tcatatggtt ttgttccaaa agagggaaca
1021 aacccaaatg attcagttga attgctggtg tctcttaata agtctgataa gtgctacaaa
1081 gagaagctac aagcactaaa aagaaatgga ttgtcagagt ttgaaagttt ccctttacgc
1141 gtcacaggat ggccagttga gttgatggct tatgcctttc ttgtggtcag ccctcccgag
1201 atgagccaac gttttgaaga gatggctgtc gctgcatcaa ataaaagtcc atccaagcct
1261 ggacttaatt atcctgaact ggaggaacaa gctcttcagt ttatcttgga ctgttgtgag
1321 tctaacatag caaaatacac aaagttccta gagggtagca gtgggtctct gcaactttca
1381 accaattcaa agcaagccaa ccggacgtta ctgctaaaac aactagcaag agatctttgc
1441 attagtgaac ggagaatcct gtatcgtaca caatatatat tgcgtaggag actgagggac
1501 atgagaggtg gtgaacttaa agctctgtca ttgttcaatg ggctcagaaa gctcttcaaa
1561 taaaaggatg gatttgtttt tcaatgttag ctgaagattt cgaggacaat gtttaatctc
1621 tagtatcttg cttcttcctt tcaggttgtc tttgttgctg atgaagctca gactgttgaa
1681 gaaaaggaaa ttgacaaatc agattacaat ctcagccgac aagcaactga tgctagaaga
1741 ctagaagtgg tcacagctca atagaagaca ctagttgtaa cttgcgattg aacagtccat
1801 atcttggttt aaatctacta tagcaccatg caacaatgta ccagtggagt catctcgtgt
1861 atattttgtt tcaggggttt cccctcgata tctatagcat aatatccctt ctatttctgc
1921 tgttttcacc cc
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