LOCUS AK103524 1964 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033131K12, full insert
sequence.
ACCESSION AK103524
VERSION AK103524.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1964)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1964
/clone="J033131K12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 120..1694
/db_xref="Osa1:LOC_Os03g14080"
/db_xref="RAP-DB:Os03g0244600"
/note="(RAP Annotation release2) Similar to AUX1-like
protein"
/note="(Rice Genome Annotation Project) auxin
transporter-like protein 3, putative, expressed"
/note="mapping to R03-TIGRv4S1-000507F (Chr.3: short
arm=7625701, long arm=7629573, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG96129.1"
/translation="MGSAADGSLANEKAPAETVGVGRYVEMEQDGGGPSTAKSRLSGL
LWHGGSAYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQLFYGLLGSWTAYLISI
LYVEYRTRKEREKVDFRNHVIQWFEVLDGLLGRHWRNVGLAFNCTFLLFGSVIQLIAC
ASNIYYINDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGLVMTTYTAWYLAVAS
LIHGQVDGVKHSGPTKMVLYFTGATNILYTFGGHAVTVEIMHAMWRPQKFKAIYLMAT
LYVLTLTLPSAASVYWAFGDELLTHSNALALLPRTAFRDAAVVLMLIHQFITFGFACT
PLYFVWEKLIGLHDCRSLFKRAAARLPVVVPIWFLAIIFPFFGPINSAVGSLLVSFTV
YIIPALAHMITFRSAHARENAVEPPPRFVGRWTGTFIINAFVVAWVLVVGFGFGGWAS
MTNFVRQIDTFGLFTKCYQCPPPPLPPAGAAPNATWPPFPATPFNATTAGLAPAPAPS
PAHFFGRHHRHHSHGL"
BASE COUNT 348 a 661 c 548 g 407 t
ORIGIN
1 gatatcctct cctacgatac tgcgcgctca gcacagaaga ggaaggtatc ttaactagcc
61 caggatacca ccacacaccg agtactgtta cgtgttcacg gtctagctaa gcagtgatca
121 tgggctcggc ggctgacggg agcctcgcca acgagaaggc gccggccgag acggtcggcg
181 tcggccgtta cgtcgaaatg gagcaggacg gcggcggacc cagcaccgca aagtcccggc
241 tctccggcct tctctggcac ggcggctcag cctacgacgc ctggttcagc tgcgcgtcca
301 accaggtggc ccaggtgctc ctgacgctgc cctactcgtt ctcccagctg gggatgctca
361 gcggcatact gttccagctc ttctacgggc tgttgggcag ctggacggcg tatctcatca
421 gcatcctgta cgtggagtac aggaccagga aggagaggga gaaggtggac ttcaggaacc
481 atgtcatcca gtggttcgag gtgctggacg gcctgctggg gaggcattgg agaaacgtcg
541 gcctggcctt caactgcacc ttcctactct tcggctccgt catccagctc atcgcctgcg
601 ctagcaacat ctactacatc aacgacaagc tggacaagag gacgtggacc tacatcttcg
661 gcgcgtgctg cgcgacgacg gtgttcatcc cgtcgttcca caactaccgg atctggtcat
721 tcctcggcct cgtcatgacc acctacacgg cctggtacct cgccgtcgcc tccctcatcc
781 atggccaggt cgatggagtg aagcactcgg gccctacaaa gatggtcctc tacttcaccg
841 gggccacaaa cattctctac accttcggtg ggcacgctgt tactgtggag atcatgcacg
901 cgatgtggag gccgcagaag ttcaaggcga tctacctgat ggcgacgctg tacgtgctga
961 cgctgacgct gccgtcggcg gcgagcgtgt actgggcgtt cggggacgag ctgctcacgc
1021 actcgaatgc gctggcgctg ctgccgcgca cggcgttccg ggacgccgcc gtggtgctca
1081 tgctcatcca ccagttcatc accttcggct tcgcctgcac gccgctctac ttcgtctggg
1141 agaagctcat cggactccac gactgccgca gcctcttcaa gcgcgccgcc gcgaggctcc
1201 ccgtcgtcgt gcccatctgg ttcctcgcca tcatcttccc cttcttcggg cccatcaact
1261 ccgccgtcgg ctccctcctc gtcagcttca ccgtctacat catccccgcc ctcgcgcaca
1321 tgatcacctt ccgctccgcg cacgctcgtg agaacgccgt ggagccgccg ccgcggttcg
1381 tggggcgatg gacgggcacg ttcatcatca acgcgttcgt ggtggcgtgg gtgctggtgg
1441 tcggcttcgg gttcggcggc tgggccagca tgaccaactt cgtccgccag atcgacacgt
1501 tcgggctctt caccaagtgc taccagtgcc cgccgccccc tctgccgccg gcgggcgccg
1561 ctccgaacgc cacctggccg ccgttcccgg cgacgccgtt caacgccacc accgccggcc
1621 tcgctccggc ccctgctcct tcgccggcgc atttcttcgg ccgccaccac cggcatcaca
1681 gccacgggct ctgaacactg aaatgtacgt accagggcaa tgctcgagct ttggtttagc
1741 tatagttgtt cactagcgcc gtcactaatt agtcttagct tagcacaaag ctgcatcttc
1801 tctagctatc agtagcatgt cagtcagacg gagtatcccg tttcaagttc cttggttctg
1861 tactgcctcc tggcgtggag ctcaaaaaac gaacagaaaa aaagggaatg ttgctacggc
1921 cgcagatgca agagccagct aatctagcct ctttactttc tctc
//