LOCUS AK103461 1754 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033129M07, full insert
sequence.
ACCESSION AK103461
VERSION AK103461.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1754)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1754
/clone="J033129M07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1754
/db_xref="Osa1:LOC_Os11g10750"
/db_xref="RAP-DB:Os11g0213600"
/note="(RAP Annotation release2) Peptidase S10, serine
carboxypeptidase family protein"
/note="(Rice Genome Annotation Project) serine
carboxypeptidase F13S12.6 precursor, putative, expressed"
/note="mapping to R11-TIGRv4S1-000279R (Chr.11: short
arm=5894285, long arm=5898161, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 446 a 393 c 456 g 459 t
ORIGIN
1 gatctcttcc caagcttcaa cttcaagaac ccacccactt ctcctcctct tctccatccg
61 ctgcggcaag cgcgcaattc agttgctgcg agctcgctcg ccggcgacaa tggcggcggc
121 ggtggcggtg gtggttggtt gcgttcttct tggtggtgtg tgggggttcc cggaggagga
181 tttggtggcg cggctgccgg ggcagcccgt cgtcgggttc aggcagttcg ccggatacgt
241 cgacgtcgac gagaaggccg ggaggagcct cttctactac ttcgccgagg cggcggaggg
301 cgccgccgcc aagccgctca ccctctggct caacggaggt cctggatgtt cttcggttgg
361 aggtggcgcg ttcacagagc tcggcccatt ttatccgaga ggagatggca gaggcctgag
421 attgaacaag aagtcttgga acaaagtatc caatcttctg tttgttgaat caccggctgg
481 agttggatgg tcctactcca acacttcatc agattacaat actggcgatg cacagaccgc
541 taatgacatg tacaaatttc tgttgggatg gtacaagaag ttccctgaat acaggtcaag
601 agggctactt cttagtggag agagctatgc agggcattat ataccgcaac tcaccgatgt
661 acttctcaca cataatgaga aatcaaatgg gttcaaattc aacatcaagg gagtagctat
721 cgggaatccg cttctcaagc ttgacagaga tgtccccgca acatatgagt atttctggtc
781 ccatggcatg atctctgacg aaatatttct atcaatcagc cacagttgtg attttgagga
841 ctataccttt agcaaccccc acaatgagag caagtcatgc aatgatgcca ttgcagaggc
901 aaacagtata gttggggatt atgtgaacaa ttacgatgtt attcttgatg tgtgctaccc
961 atcaattgtg atgcaggagc tacggctgcg gaaatatgtg actaaaatga gtgtaggtgt
1021 ggatgtttgt atgacttacg aaaggtattt ctatttcaac cttccagaag tgcagcaagc
1081 tcttcatgct aacagaacac atttgcccta tggctggagc atgtgcagcg atgtgctgaa
1141 ctacagcaat aaggatggca acatcaacat cttgccatta cttcagagaa ttgtagagca
1201 caaaatacca gtttgggtgt tcagtggaga tcaagactct gtggtgcccc tattgggctc
1261 ccgaactctt gtacgagagc tagctcatga catgggcttg catgtcacag tcccatacag
1321 cagctggttc cgcagagggc aggttggagg ctgggtaaca gagtatggta atattctgac
1381 ctttgcgacg gtgcgaggag catctcacat ggtgccattt gcgcagccag accgagctct
1441 cggacttttt caatcattcg cacttggacg gagactccag aatacaaccc acccacctat
1501 taactaagtg tacctacgaa aggagctgaa gatacaaaca aatagtctag gattttcagt
1561 tttgctacag aagattagtt cataagggtg tattagatgg tcaaatacga atattttatc
1621 tattagagag aacagggaaa taatactaga ttaaattctt tattgttctc tatctggatt
1681 gtcagattgc attcctggaa gtctggaaca ttgagcaatc tgtataacta tgtcatttta
1741 ggggttttgg gggc
//