LOCUS AK103416 1337 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033128I21, full insert
sequence.
ACCESSION AK103416
VERSION AK103416.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1337)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1337
/clone="J033128I21"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 601..1047
/db_xref="Osa1:LOC_Os05g37140"
/db_xref="RAP-DB:Os05g0443500"
/note="(RAP Annotation release2) Similar to Ferredoxin
VI, chloroplast precursor (Fd VI)"
/note="(Rice Genome Annotation Project) ferredoxin-6,
chloroplast precursor, putative, expressed"
/note="mapping to R05-TIGRv4S1-000743R (Chr.5: short
arm=21622564, long arm=21623900, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG96070.1"
/translation="MATATAPRLCFPKPGAAIAPATKSPSFIGYAKQTLNMSGLRISN
KFRVSATAVHKVKLIGPDGVEHEFEAPEDTYILEAAETAGVELPFSCRAGSCSTCAGK
MSSGEVDQSEGSFLDENQMGEGYVLTCISYPKADCVIHTHKEEELY"
BASE COUNT 306 a 308 c 327 g 396 t
ORIGIN
1 gcttcttctt acttaccctc ccttctgatc ccctgtttcc cctggtcatg gcggcgagat
61 ctccgtgtag gagtgagatc gccgcctcct cctcatggtg tttcctggtg cggcgcgcgt
121 gagagctcgg cccgagcccg agccctctcg cttttgccgt gccggatctg attctgtccg
181 tgctagtgtt agtgtcacgt tttggtgtag acagtagact catgaaacga ggagaggctt
241 ttttgtagga tgggtcaact tttaggaact tgtccaaagt ttaacaactc tcaaggatga
301 actgggaata gtggcgctgt tatacattag gagttggtct gcgagaaatt tggatgggat
361 tagttgcgga tcttccatca gctagtggag cttaaagata ctgatgtgtt gtccgtactg
421 aaatgcactt ctttgccttg gcaaaacccc agtctccccc ataaatttag ttttgtttgc
481 ttagctttac caaatgccat cagcatacat ggtgtaaaat catatacttt tgtaacgaac
541 gaattgtgtt tatttgcatt tcaactagtg ctttcttcct aatttatcag gactatcgag
601 atggcaactg caactgctcc gagattgtgc tttcctaaac ccggcgcggc cattgctccg
661 gcgaccaaga gcccttcctt cattggttac gcaaagcaaa cattgaacat gtcaggccta
721 aggatctcca acaagttcag ggtgtccgcg acagcggtgc acaaggtaaa gcttataggc
781 ccggacggtg tcgagcacga gtttgaagcc cctgaagata cctacattct cgaggccgct
841 gaaactgccg gggtggagct gccattctca tgccgtgctg gatcatgctc cacatgtgcg
901 ggtaagatgt catcgggaga agttgatcag tcggaaggat ccttcctcga cgagaaccag
961 atgggcgagg gatacgttct gacatgcatt tcgtacccta aggcggattg cgtcattcac
1021 acccacaagg aggaagaact ctactaggtc gctcttttta tgcttctgtg ggcacatttg
1081 ctgatttcaa agtggactcg ctgttcagtt agttttcgct atccaaaaaa tggccatatc
1141 tttgtattag tcttttgatg ggaccgtgtc atatgagttg tgacaataat tgtcgtagtc
1201 ctgttcagca tttaaaattg cgtttgttca attcacagca ggtccaactt ccaacgatga
1261 catgttatca gaagttgtgt gtaatggtat tattgtggat cacttccagt aggaaaaaat
1321 tgacttgtcc tttctcc
//