LOCUS AK103391 1769 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033127L03, full insert
sequence.
ACCESSION AK103391
VERSION AK103391.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1769)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1769
/clone="J033127L03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 355..1470
/db_xref="Osa1:LOC_Os02g44230"
/db_xref="RAP-DB:Os02g0661100"
/note="(RAP Annotation release2) Similar to
Trehalose-6-phosphate phosphatase"
/note="(Rice Genome Annotation Project) expressed protein"
/note="mapping to R02-TIGRv4S1-001117R (Chr.2: short
arm=26761736, long arm=26765754, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG96056.1"
/translation="MDLSNSSPVITDPVAISQQLLGGLPSNLMQFSVMPGGYSSSGMN
VGVSRLKIEEVLVNGLLDAMKSSSPRRRLNVAFGEDNSSEEEDPAYSAWMAKCPSALA
SFKQIVASAQGKKIAVFLDYDGTLSPIVDDPDKAVMSPVMRAAVRNVAKYFPTAIVSG
RSRNKVFEFVKLKELYYAGSHGMDIMAPSANHEHSAEKSKQANLFQPAHDFLPMIDEV
TKSLLQVVSGIEGATVENNKFCVSVHYRNVAEKDWKLVARLVNEVLEAFPRLKVTNGR
MVLEVRPVIDWDKGKAVEFLLQSLGLNDSENVIPIYIGDDRTDEDAFKVLRQRNCGYG
ILVSQVPKETEAFYSLRDPSEVMEFLNFLVRWKKHSV"
BASE COUNT 473 a 383 c 412 g 501 t
ORIGIN
1 gagcactcca tcttcctcca tctgcgtatt ttccaacaca tctctcttgc agttcgtttc
61 aagtctttca ttaagtaaaa ctttctgaac atttgaagtg caacggagct ggcgttttat
121 ggcttttcct atgaggcaat ccacatctct gatatagatg tgtactcgtt ctgaacatga
181 caagttctca ggtatttctc tgttgatgaa ctgcctccac acctgcagtg acaagaagac
241 actgaagaag tggtttttca tcgacaagac agttggctaa attcagcagt gcactcgtcg
301 ttaaagcgat cgatcatact tctttcttga tctcatcatc ctaaattttc ccaaatggat
361 ttgagcaata gctcacctgt catcaccgat ccggtggcga tcagccagca gttgttgggc
421 ggcctgcctt caaatctgat gcagttttca gtcatgcccg gtggctactc cagctctggc
481 atgaacgttg gtgtcagtag gctcaaaatc gaggaagtcc ttgtcaatgg actgcttgat
541 gccatgaaat cctcgtcacc tcgcaggagg ctgaatgtag catttggcga ggacaattca
601 tctgaagaag aagaccctgc ttacagcgct tggatggcaa aatgtccttc tgctttggct
661 tccttcaagc aaattgtagc cagtgcacaa gggaagaaga ttgctgtgtt tctagactat
721 gacggcacac tgtcgcctat tgtggatgat cctgacaaag cagtgatgtc tcccgtgatg
781 agagctgctg tgagaaatgt tgcgaagtac ttccccactg caattgtcag cggaaggtcc
841 cgcaataagg tgtttgaatt tgtaaaactg aaggagcttt attatgctgg aagccatggt
901 atggacataa tggcaccttc agcaaatcat gagcacagtg ctgaaaagag caaacaggcc
961 aatctcttcc aacctgcaca cgactttctg ccaatgatcg atgaggttac caagtccctc
1021 ttgcaagttg tcagtggaat tgaaggtgca actgttgaga acaacaaatt ctgcgtttct
1081 gtacattatc gcaacgttgc agagaaggat tggaaactgg tcgcacggct cgtaaacgaa
1141 gtgctggagg cttttcctcg tctcaaagta accaatggac gaatggtttt agaggttcgt
1201 ccggtgatcg actgggacaa gggaaaggct gtggagtttc tgctccagtc actcgggcta
1261 aatgactctg aaaatgtgat ccccatctac attggagacg acagaactga cgaagacgct
1321 ttcaaggtac ttcgacagcg aaattgcggt tatggaatac tagtttcaca ggttcccaag
1381 gaaactgaag ccttctactc gctgagagat ccatctgaag tgatggagtt cctcaatttc
1441 ttggtgagat ggaagaagca ctcagtgtga aaaaaagaag acagtctgag caggttttac
1501 taatactact ccggcagaaa taactgtagt ttccgaggcg acaattttga agcattggac
1561 gctgtagata gatgtaataa ctctctagat atgtggttcc aattcattct tattgatcga
1621 tgttattgta ttgttcatgt tctccaccgc tgagaaaaat taatcagtga tggttgatcc
1681 ggtctcttgc cattgtaagt tgtaagcaag aaggccctct tcttagtatc catgctgatg
1741 aacgaaatta aaaccttcat ttttcgtgt
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