LOCUS       AK103288                3346 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J033124N21, full insert
            sequence.
ACCESSION   AK103288
VERSION     AK103288.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 3346)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..3346
                     /clone="J033124N21"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..3346
                     /db_xref="Osa1:LOC_Os01g20940"
                     /db_xref="RAP-DB:Os01g0311500"
                     /note="(RAP Annotation release2) Similar to
                     PROPYZAMIDE-HTPERSENSITIVE 1"
                     /note="(Rice Genome Annotation Project) PHS1, putative,
                     expressed"
                     /note="mapping to R01-TIGRv4S1-000591F (Chr.1: short
                     arm=11676289, long arm=11682319, direction=forward) for
                     TIGR Pseudomol ver4"
BASE COUNT          870 a          747 c          839 g          890 t
ORIGIN      
        1 gtccagtttg ttcagcaact gcccccttct cttccgactg cactgatccg cccgcccttc
       61 tctcgctctg ctttcgtccc cccccactgg ccactctctc cccatttgcg ggaaaagccg
      121 acacctagac ggaaagggcg gagcggcgaa gagaggggag gagggatccc gccttttccg
      181 tcggatttga cggccccccg cgctctccct ctctctgtct ctctctctcc gggagcgagc
      241 cagccagcag caaaagccga ccaccaccat cgccacgcac ccagtatatc acaccgcgcg
      301 cctggggtcg tcaacggcta cctgcgccgc ggccccctcc catggaacag cgggaggcgc
      361 ggcaagagga ggaggaggag gaggagcgcg acgcgccggc ggttcctccc ggggaaaacg
      421 acgaggaaag agatcgaaac ctatcctctc gtgtggtttc tttgttattt ggtggtgata
      481 tctcagcgca gacattcgag aaatgggtat cattggtacg taaacgaagt ggggcattcc
      541 ggccatcagg gttcccacgc cggaattcga ggattgaagt catgccgagt gggagtttct
      601 cacttttcag tgcagcagac ttaagtgagc aagtggttac agcagagcta ataggcaaag
      661 aagatatacc attgacaagc agtcagccta cagaaataag tttgtgggag agacttggaa
      721 atgcttctgc actagatatt gaatcacctg acttttcatg gaatatgctg tcatctctgc
      781 accatacaga gcatagtagt agttcggacc actctgaaga tgaaatgtgc aaacctcttg
      841 aggtgactgt gaactctggt ggtgtagtgt tctttgctct atttaattct tcaagtaatg
      901 tcttaccaaa agaagcagct gctgttataa agttctcatc atcaaagatg tcaactcagg
      961 cagaacggtt gggttatgaa tttgctagat tgcttggagt tcagacacca caagctagag
     1021 tggtacacaa ttctagccta gagtggcagg atattagaaa ggctgcagaa aatgcacgat
     1081 cagtagcagt ttcaaatagt gatgaggttg gtgagatgac atgctcagaa ttgttggaag
     1141 ctcttgagct aagccgttgt cttcttctaa tgagttatat tcatggatct ccccttcttg
     1201 agagttcaaa ggcatttagt ccacgggaag ctgcttgcgt tactgcttca tcattgggta
     1261 gggtcttgat gctagatctg atactcagaa atgaggacag actcccatgc cgtcagcttg
     1321 gttggcgtgg caatcctgca aacctgatga tttccgatag accttctgca cccagtgtgg
     1381 acagattgga tgattccaag tgcactacag aaagttctat tccaacgatt actcaattgg
     1441 tgcagagtga caagcggact cacactgcaa atgcaaccat aaattctcca gaattggtgt
     1501 ccatgtcacc aaaaccagat gcattgaaaa gtgtaagagg aaatgctgat agtttggatg
     1561 gccctgtcca cattgtagca atcgacactg gagtgccacg tcgcccccct gcagggagac
     1621 gggtgaaaga tcatgagcgt tatcccaaag ttgtgcagct tatgttgaat aattcagatt
     1681 actcctcgaa tatattgtat gagatttctg gtggtaagct agggactcca ggacctgatg
     1741 aagcaatcgc tttcactgat tcttgttgtt ccatttctga tgaagacaat actgctgcga
     1801 ttcatgaatt ccgaggggca tttcgtgcag ctctgaggga tcttgagggg ttccatctat
     1861 ttcttctcca gctataccaa aaactagatg gtgttttgcg agttttcttg tccatagtta
     1921 ctaaaggctc tgaagaatcc gacaacaatg atgctacagt tcctgatttt ccatcacccg
     1981 gtgctaacta cagtactcct tgcgctccta gtaagcagca gaatagtgaa ttgcacggtg
     2041 attctgaaat actgaaatca acgacaaagc cttcttctgc gggatcccgt ggaagctcag
     2101 actcagtatc tcctctgtcc agggagagtt ggagtaataa gtatttcaaa gggagtgcag
     2161 agggtccccg aagtttaaga atgacaatga agctccgtga tttttacaag actccgaagg
     2221 ttgatcctga attagtcaaa gaaatagaac aatggaatga ggcgcttaag tctgatgtga
     2281 tcaatttttg cgaggagaac aattttcatt ctggattttt tgatggcaat gagaataaca
     2341 tggtagctga tgcatatgaa ttgaaggtgc gtctagaaca catcattgaa aggatagcct
     2401 tggtctctga cgctgcaaat accgagcgac cttctcttgt tatcaacaac ttgttcatag
     2461 gtggggctct ggctgcaaga tctatgtaca cccttcagca tctgggcatt acccatatac
     2521 tatgtttgtg ttcaaatgag attggtcaat ctgattccca atttcccgat ctttttgaat
     2581 acaagaactt ttcaattagt gatgatgatg atgcaaatat cagtgatctt tttgaagaag
     2641 cctcagatta cttcgatcat gtagatcatg ttggaggcaa ggttcttgtt cattgctttg
     2701 aaggaaaaag tcggagtgcc acaattgtgc ttgcctacct gatgctcaga aagggcctca
     2761 ctcttgcgaa agcttggaac ttactgaaga aagtgcatcg tcgggcacaa ccgaatgacg
     2821 gtttcgcaaa ggctctgcta gcgcttgaca ggaagctgca tggaaaggtg tctatggatt
     2881 ggcagcacaa gcgacctgag atgaaggtgt gcccaatctg cagcaagaac gtcggactga
     2941 gcacgagctc actcaaactg catctgcaga aggctcacaa gcggctatct gcaggtagtg
     3001 tggacagcgc catgaccttg gagattcaga agtcgatcca gtcgctccgg atcagccgcg
     3061 gtgggagcct gagcccttct cagaagctta ccaaggcgtt cgctgatgag ctcagcttct
     3121 gaatctgttc ttagtagttt tttttttctc tctcgaggat gctagtgttg tggcagtgtg
     3181 gtgatgtgca cggtacacgt tttcaaaccg atgtaattta gcggtagatg tatcaagcag
     3241 accgaacttt aggtgtggac agaataggtg tgatacaagg aaatgttcac ttttaactgt
     3301 atacaaccag tttattagca ggagaacgtt taggttttgt aatacc
//