LOCUS AK103288 3346 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033124N21, full insert sequence. ACCESSION AK103288 VERSION AK103288.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3346) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3346 /clone="J033124N21" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..3346 /db_xref="Osa1:LOC_Os01g20940" /db_xref="RAP-DB:Os01g0311500" /note="(RAP Annotation release2) Similar to PROPYZAMIDE-HTPERSENSITIVE 1" /note="(Rice Genome Annotation Project) PHS1, putative, expressed" /note="mapping to R01-TIGRv4S1-000591F (Chr.1: short arm=11676289, long arm=11682319, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 870 a 747 c 839 g 890 t ORIGIN 1 gtccagtttg ttcagcaact gcccccttct cttccgactg cactgatccg cccgcccttc 61 tctcgctctg ctttcgtccc cccccactgg ccactctctc cccatttgcg ggaaaagccg 121 acacctagac ggaaagggcg gagcggcgaa gagaggggag gagggatccc gccttttccg 181 tcggatttga cggccccccg cgctctccct ctctctgtct ctctctctcc gggagcgagc 241 cagccagcag caaaagccga ccaccaccat cgccacgcac ccagtatatc acaccgcgcg 301 cctggggtcg tcaacggcta cctgcgccgc ggccccctcc catggaacag cgggaggcgc 361 ggcaagagga ggaggaggag gaggagcgcg acgcgccggc ggttcctccc ggggaaaacg 421 acgaggaaag agatcgaaac ctatcctctc gtgtggtttc tttgttattt ggtggtgata 481 tctcagcgca gacattcgag aaatgggtat cattggtacg taaacgaagt ggggcattcc 541 ggccatcagg gttcccacgc cggaattcga ggattgaagt catgccgagt gggagtttct 601 cacttttcag tgcagcagac ttaagtgagc aagtggttac agcagagcta ataggcaaag 661 aagatatacc attgacaagc agtcagccta cagaaataag tttgtgggag agacttggaa 721 atgcttctgc actagatatt gaatcacctg acttttcatg gaatatgctg tcatctctgc 781 accatacaga gcatagtagt agttcggacc actctgaaga tgaaatgtgc aaacctcttg 841 aggtgactgt gaactctggt ggtgtagtgt tctttgctct atttaattct tcaagtaatg 901 tcttaccaaa agaagcagct gctgttataa agttctcatc atcaaagatg tcaactcagg 961 cagaacggtt gggttatgaa tttgctagat tgcttggagt tcagacacca caagctagag 1021 tggtacacaa ttctagccta gagtggcagg atattagaaa ggctgcagaa aatgcacgat 1081 cagtagcagt ttcaaatagt gatgaggttg gtgagatgac atgctcagaa ttgttggaag 1141 ctcttgagct aagccgttgt cttcttctaa tgagttatat tcatggatct ccccttcttg 1201 agagttcaaa ggcatttagt ccacgggaag ctgcttgcgt tactgcttca tcattgggta 1261 gggtcttgat gctagatctg atactcagaa atgaggacag actcccatgc cgtcagcttg 1321 gttggcgtgg caatcctgca aacctgatga tttccgatag accttctgca cccagtgtgg 1381 acagattgga tgattccaag tgcactacag aaagttctat tccaacgatt actcaattgg 1441 tgcagagtga caagcggact cacactgcaa atgcaaccat aaattctcca gaattggtgt 1501 ccatgtcacc aaaaccagat gcattgaaaa gtgtaagagg aaatgctgat agtttggatg 1561 gccctgtcca cattgtagca atcgacactg gagtgccacg tcgcccccct gcagggagac 1621 gggtgaaaga tcatgagcgt tatcccaaag ttgtgcagct tatgttgaat aattcagatt 1681 actcctcgaa tatattgtat gagatttctg gtggtaagct agggactcca ggacctgatg 1741 aagcaatcgc tttcactgat tcttgttgtt ccatttctga tgaagacaat actgctgcga 1801 ttcatgaatt ccgaggggca tttcgtgcag ctctgaggga tcttgagggg ttccatctat 1861 ttcttctcca gctataccaa aaactagatg gtgttttgcg agttttcttg tccatagtta 1921 ctaaaggctc tgaagaatcc gacaacaatg atgctacagt tcctgatttt ccatcacccg 1981 gtgctaacta cagtactcct tgcgctccta gtaagcagca gaatagtgaa ttgcacggtg 2041 attctgaaat actgaaatca acgacaaagc cttcttctgc gggatcccgt ggaagctcag 2101 actcagtatc tcctctgtcc agggagagtt ggagtaataa gtatttcaaa gggagtgcag 2161 agggtccccg aagtttaaga atgacaatga agctccgtga tttttacaag actccgaagg 2221 ttgatcctga attagtcaaa gaaatagaac aatggaatga ggcgcttaag tctgatgtga 2281 tcaatttttg cgaggagaac aattttcatt ctggattttt tgatggcaat gagaataaca 2341 tggtagctga tgcatatgaa ttgaaggtgc gtctagaaca catcattgaa aggatagcct 2401 tggtctctga cgctgcaaat accgagcgac cttctcttgt tatcaacaac ttgttcatag 2461 gtggggctct ggctgcaaga tctatgtaca cccttcagca tctgggcatt acccatatac 2521 tatgtttgtg ttcaaatgag attggtcaat ctgattccca atttcccgat ctttttgaat 2581 acaagaactt ttcaattagt gatgatgatg atgcaaatat cagtgatctt tttgaagaag 2641 cctcagatta cttcgatcat gtagatcatg ttggaggcaa ggttcttgtt cattgctttg 2701 aaggaaaaag tcggagtgcc acaattgtgc ttgcctacct gatgctcaga aagggcctca 2761 ctcttgcgaa agcttggaac ttactgaaga aagtgcatcg tcgggcacaa ccgaatgacg 2821 gtttcgcaaa ggctctgcta gcgcttgaca ggaagctgca tggaaaggtg tctatggatt 2881 ggcagcacaa gcgacctgag atgaaggtgt gcccaatctg cagcaagaac gtcggactga 2941 gcacgagctc actcaaactg catctgcaga aggctcacaa gcggctatct gcaggtagtg 3001 tggacagcgc catgaccttg gagattcaga agtcgatcca gtcgctccgg atcagccgcg 3061 gtgggagcct gagcccttct cagaagctta ccaaggcgtt cgctgatgag ctcagcttct 3121 gaatctgttc ttagtagttt tttttttctc tctcgaggat gctagtgttg tggcagtgtg 3181 gtgatgtgca cggtacacgt tttcaaaccg atgtaattta gcggtagatg tatcaagcag 3241 accgaacttt aggtgtggac agaataggtg tgatacaagg aaatgttcac ttttaactgt 3301 atacaaccag tttattagca ggagaacgtt taggttttgt aatacc //