LOCUS AK103141 1652 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033120G12, full insert
sequence.
ACCESSION AK103141
VERSION AK103141.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1652)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1652
/clone="J033120G12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 128..1243
/db_xref="Osa1:LOC_Os09g10600"
/db_xref="RAP-DB:Os09g0277800"
/note="(RAP Annotation release2) Similar to
Enoyl-[acyl-carrier-protein] reductase [NADH],
chloroplast precursor (EC 1.3.1.9) (NADH-dependent
enoyl-ACP reductase)"
/note="(Rice Genome Annotation Project)
enoyl-[acyl-carrier-protein] reductase [NADH],
chloroplast precursor, expressed"
/note="mapping to R09-TIGRv4S1-000133F (Chr.9: short
arm=5780846, long arm=5784946, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG95916.1"
/translation="MGASVTTGLQMAAARPCIPACQRLLGSRAALPSFGRALSTQTGF
ASCRKTASAGPFVSLNHKRFAVRAMSAQGLPIDLRGKRAFIAGVADDNGYGWAIAKAL
AAAGAEILVGTWVPALNIFETSLRRGKFDESRKLPDGSLMEITKVYPLDAVFDSPEDV
PDDVKANKRYAGSSNWTVKEVAETVKNDFGTIDILVHSLANGPEVKNSLLETSRKGYL
AAVSASSYSFISLLQHFLPIMNPGGATISLTYIASERTIPGYGGGMSSAKAALESDTR
VLAYEAGRKGKIRVNTISAGPLGSRAAKAIGFIEKMIEYSYVNAPLQKELLADEVGNT
AAFLASPLASAITGSTIYVDNGLNTMGLALDSPTLST"
BASE COUNT 447 a 358 c 407 g 440 t
ORIGIN
1 gaccctcaaa tctccaactc caacgaacac acagagggag gaatcggatc ggattggatc
61 ccaacccacc ccgcgccgcc gctgccgcgt cccgtcccga atcctccggc gagcctgacg
121 tcggccgatg ggcgcatcag tgactactgg cttgcagatg gcggcggcac gcccttgtat
181 cccagcttgc caacgcctgc tagggtcaag agcagcactt ccttcatttg gaagggcgct
241 tagtacccaa actggcttcg cgagctgcag aaaaacagca tcagcagggc cgtttgtttc
301 tctgaaccac aagaggtttg ccgtgagggc gatgtctgcc cagggactcc ccattgatct
361 cagaggtaaa agagcattta ttgctggagt tgctgatgat aatggctatg gctgggcaat
421 agcaaaagct cttgctgcag ctggtgccga gattcttgtt ggtacatggg tacctgcact
481 gaacatattt gagacaagct tgaggcgtgg gaagtttgac gaatcacgaa agcttcctga
541 tggatctctt atggagatta caaaagtcta cccattggat gcagtttttg actctcctga
601 ggatgttcct gatgatgtta aagcaaacaa aaggtatgct ggatcttcaa actggactgt
661 taaggaagtt gctgaaactg tgaagaatga ctttggtacc attgacatcc tcgtacactc
721 tcttgcaaat ggtcctgagg taaaaaactc tttgctggag acatcaagaa aagggtatct
781 tgctgcagtt tcagcatcta gttactcttt catctcttta ctccaacact tccttcctat
841 aatgaatcca gggggtgcta ctatatcctt gacctacata gcttccgaaa ggacaattcc
901 tggatacggt ggcggcatga gctcagcaaa agcagcactt gagagtgata caagagttct
961 agcttacgaa gcaggtcgaa aaggcaagat cagagtgaat accatatcag caggtccatt
1021 gggaagtcga gcagccaaag ctattggttt catcgagaag atgatagagt attcgtacgt
1081 gaacgcacca ctgcagaagg agctcttggc agatgaagtg gggaacacag cagcattctt
1141 agcatcgccg ttggcatctg caatcactgg atcaactatc tatgttgaca atgggctcaa
1201 tacaatggga cttgcacttg acagccctac actatccaca tagacgtgta aactattctc
1261 ctggatggtt ccgtttggta gcagatggtc attaggcccc aactgaagct caaaaccaga
1321 tgctgatatg aaaatgagga aagatggtag tttgaagatg cagactttct agaaagttga
1381 gttactgggt tttcttcatt ttggtctatg ctagcaatga gaattagcat tgtaggagta
1441 cagtttgttg attgttctta tgttagtcct agcctcctag gatctgatct gaagaaagag
1501 aataatggaa gttaaaaaga acaggaaatc gaagttctgc ccattgcgtt gtttgttttt
1561 cgtgtagtgt tatctctcac tcgggtttta taaaagttgt aaaaatctat aggtattata
1621 acgtgtggta catgatcaca caggttttta tt
//