LOCUS AK103124 3311 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033119L05, full insert
sequence.
ACCESSION AK103124
VERSION AK103124.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 3311)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..3311
/clone="J033119L05"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 264..1739
/db_xref="Osa1:LOC_Os11g02670"
/db_xref="RAP-DB:Os11g0119200"
/note="(RAP Annotation release2) Zinc finger, RING-type
domain containing protein"
/note="(Rice Genome Annotation Project) protein binding
protein, putative, expressed"
/note="mapping to R11-TIGRv4S1-000056F (Chr.11: short
arm=855524, long arm=859981, direction=forward) for TIGR
Pseudomol ver4"
/protein_id="BAG95904.1"
/translation="MSDHQFAGQPDVQCLVCTRPFTLDAQVTDTFEALAICRDCKATV
LNDVERDEITSTSHHTRRRRQRSRTASIDSLEDAFSQEFSQLIDLARRQGRETDIDSS
SVLPQHASYNATPSHSQRWHASDDESDGLNYVDSVFGEIESTISFGDYGADSDTSIEE
HSVSARRRISIQLDNGSYMNTDTDIDPMNARLDQWDSDDQEDVEESGFDETINTMTQH
QQQSHDIQLSGLSEDESEDGVWNWSVAVRQRANVTNLLEDMEGPEMRTTFVGNPDDYV
DARQFEMLLEQFAEDNSSRRGAPPAATSFIENLPSVIISTSHQINDDVICPVCKDPIP
TRARAKQLPCMHLYHSSCILPWFSSRNTCPVCRYELPTDDAEYERSKQATTNVRDIQV
VEENSDEQEVQVTRQMAVGAIEETNTSEHNVRVDEQPSSARRRSGWLFIAAAPVVSLI
GFALVLCFTNPARSGRRQLYCRSPSATEVHVGTKKSWWSMF"
BASE COUNT 942 a 673 c 773 g 923 t
ORIGIN
1 ggctccactg attcgattgg cgtcaccttc atcaatcgat cgctgcagac tgcagttggt
61 tccctcctct cctgccaacg accacgagcc ctagtttagg ccgcccccaa atctactgcc
121 atccccgact agtatcccat ttctcttgat tttaagggat cctgaggggg atgcttcctc
181 tactctgctg cagcaacgct tgacaaggct atcacatcca atccaatggt gcactgctga
241 ccaacttcag tgtcgggata tccatgtctg accatcaatt tgccggccaa ccagatgtgc
301 agtgcctagt ttgcacaagg ccgtttactt tggatgctca ggtgactgat acctttgaag
361 ctttagccat atgcagggac tgcaaggcca cagtacttaa cgatgtcgaa agagatgaaa
421 taaccagcac ttctcatcac acaagacgga gaaggcagag atccaggact gcaagtattg
481 attccctgga ggacgcattc tcgcaggagt tctctcagct gatcgactta gcaagaagac
541 aaggtcgtga aacggatatt gattcttcgt cagtcctgcc gcaacatgcg tcgtacaatg
601 cgacaccaag ccactctcaa agatggcatg cttcagatga cgagagcgac ggccttaatt
661 atgttgattc tgtgtttggt gaaattgaat caaccatcag ttttggtgac tatggtgcgg
721 attcagacac ctccatagag gaacatagtg tatcggcaag gaggaggatt tccattcaac
781 ttgacaatgg aagttacatg aacacagata ccgatattga tcccatgaat gctaggctgg
841 atcagtggga ttcagatgac caggaagatg tggaagagtc tggttttgat gaaacaataa
901 acaccatgac ccagcaccag cagcaatcac atgatattca gctaagtgga ttgagtgagg
961 acgaatctga agatggtgta tggaattgga gcgtggctgt acgtcaaaga gcaaacgtga
1021 caaacttgct agaggacatg gaagggccag aaatgaggac aacttttgtc gggaatccag
1081 atgattatgt tgatgcaagg cagttcgaga tgctccttga gcaatttgct gaggacaaca
1141 gttccagaag aggagctcca ccagctgcta catcctttat tgaaaatctc ccctctgtga
1201 ttatctccac aagtcatcag ataaatgatg atgtgatctg tccggtctgc aaagatccaa
1261 ttcctaccag agctagagca aaacagctac catgcatgca tctttatcat tcatcgtgca
1321 tcttgccatg gtttagttct agaaatacat gtcctgtctg ccgatatgag cttcctacag
1381 atgatgcaga gtatgaaagg tccaagcaag ccacaaccaa tgtaagagac attcaggttg
1441 tggaagaaaa ttctgatgaa caagaggtcc aggtaactcg tcagatggct gttggtgcta
1501 tcgaagagac taatacaagt gaacacaatg ttcgtgttga tgagcaacca agcagtgcac
1561 gcaggcgcag tggatggctt tttattgctg ctgctccagt cgtaagcctt atcggtttcg
1621 ctctagtttt atgctttaca aatcctgcta ggagtggtag aaggcaactg tactgtagat
1681 ccccaagtgc cactgaagta catgtgggta ccaaaaagag ttggtggtct atgttctaga
1741 atgttccggc ggtacatctg ataacaaaat gactatatat ggtggtgcgt gattgtttct
1801 ttagaatagt tttattttaa aattttcaaa tgttgtagtt gctgcagtga ccggtcggag
1861 tgttgtaaaa gaattcacat gcctagtttc ttctgctact ttgctcagtc aagaaaagtg
1921 tgtattgata cttgctattt gtttaacata tatgtgccat tggatatcct atgcttcctt
1981 gattccttct gttgttgcct catttaaaaa tcaccatgga agagaagact ccatttgcat
2041 tcagtgcttt tcagaattct acccagtgtc cagttgagaa gtaattcgtc tcctattgtt
2101 tgaagctcgc gtctaggctt cattggtttg tgcctcacaa attttttctg tatgttaatt
2161 cttggtatat tgtttctctc atgaaatgct tctggtagct aaagtaggtt gtgcataatg
2221 cagtatgcta gcacagaact taaggctggt tttagattgt catcaggtaa aacaggggga
2281 tcaaaatgat tttcttgcag taatttagtc tgttgaattc acatcgtcat gaactggaag
2341 gtctaactga ttgtaaattg atcccaagat gtgaaagcaa cctacaaaac aatcagttgt
2401 tgaagaaaag gtcaaacaaa agaattcaca tgcttgaggt gttaaacaaa tatataaagc
2461 tagtgcacga aagacctaat gtactgaaga tttgacagaa ataatttgct tctctggttc
2521 cctatgctca tggagaaatt gcttgcactc attgttgttc ttgtcatact tcttagctta
2581 gctctgttct acttgtgcaa catcctatgg ctgagggctg tgaagataag gaagaagttg
2641 aggaggcaag gcataagggg tcccaagcct acttttctct atggcaacac caaggagatc
2701 aaaagaatcc gacaagaact caaactttca cagaagcaag gcaccaacaa cttcatctcc
2761 accctcttcc cacacttcct cctttggcgg gaaacttatg gcccagtgtt cctatactca
2821 acaggagcta tggagatact acaagtttct cacccagata tggtgaagga tataggccgg
2881 tggacaccat cagagcttgg taagcctaat tatctaaaga aatctcgcaa ggccctcttt
2941 ggaggaggtt tatttacaga gaatggtgat gaatgggcct atcagaggaa gataattgca
3001 ccagagttct tcatggataa gattaagggt atgatacagc taattgagga tgcaaccgtt
3061 ccagtgttag aagcatggga ggatatgatt gacgatgagg gagggtgtag ggaaatagtt
3121 gtcgatgatt acttgcggaa cttgtcagca gatgtaattg ccagggcttg ctttgggagt
3181 agcttcacaa aaggagaaga aatattttgc aagcttaggc agctccaaaa agcaattgct
3241 cggcaagatt cgtttgttgg tctgtctgca ctgtggtaag tcaatgaaat tagtggcaat
3301 aaaatgaaat t
//