LOCUS AK103110 2683 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033119C07, full insert
sequence.
ACCESSION AK103110
VERSION AK103110.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2683)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2683
/clone="J033119C07"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 499..2664
/db_xref="Osa1:LOC_Os12g32820"
/note="(Rice Genome Annotation Project) PDR-like ABC
transporter, putative, expressed"
/note="mapping to R12-TIGRv4S1-000571R (Chr.12: short
arm=19804204, long arm=19808532, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95896.1"
/translation="MTVRETLDFSSRCQGVGRRPKILKEVSARESAAGIIPDADIDIY
MKAISVEASKRSLQTDYILKIMGLEICADTMVGDAMIRGLSGGQKKRLTTAEMIVGPA
RAYFMDEISNGLDSSTTFQIISCFQQLTNISEYTMVISLLQPTPEVFDLFDDLILMAE
GKIIYHGPRNEALNFFEECGFICPERKEVADFLQEILSCKDQQQYWSGPNESYRYISP
HELSSMFKENHRGRKLEEPIVSPKSELGKEALAFNKYSLQKLEMFKACGAREALLMKR
SMFVYVFKTGQLAIIALVTMSVFLRTRMTTDFTHATYYMGALFFSILMIMLNGTPEIS
MQIRRLPSFYKQKSYYFYSSWAYAIPASVLKVPVSILDSLVWICITYYGIGYTASVSR
FFCQFLMLCFVHQSVTSLYRFIASYFQTPTASFFYLFLALTFFLMFGGFTLPKPSMPG
WLNWGFWISPMTYAEIGTVINEFQAPRWQKETIQNITIGNRILINHGLYYSWHFYWIS
IGALFGSIILFYIAFGLALDYITSIEEYHGSRPIKRLCQEQEKDSNIRKESDGHSNIS
RAKMTIPVMELPITFHNLNYYIDTPPEMLKQGYPTKRLQLLNNITGALRPGVLSALMG
VSGAGKTTLLDVLAGRKTGGYIEGDIRIGGYPKVQETFVRILGYCEQADIHSPQLTVE
ESVTYSAWLRLPSHVDKKTRSVCPLEVGTTQTYTDFNNR"
BASE COUNT 778 a 606 c 578 g 721 t
ORIGIN
1 gccagcgccg ccgcaattcg ctcgccgccg ccgccgccgc cggtgggcgg tggcttgcca
61 cctccctctc cgcctccggc agccttctac gctgcccgtc tccgtctctt ctcccttcac
121 ccaaatccct agacattcgg ccatggcccc ccctgactct tctctcttct tggccgcccg
181 ccgcggcgct gcctgacgag gatcggcggc tcggggcgga ggaaccccga gcttccggcg
241 cgagggggtg gcctcctcct cctcctcatc ctcatcgtcg ccgccgccca cgtcgtctcg
301 ccctcggcca acgcccgagc tcgaccacaa actaaaaatc aagaacaaga aagttttatg
361 ttctgacaaa ctgaatgtga agatgcaaag cttttacagg taacagggga tatctcttac
421 aatggctatc agcttgatga atttgtgcct gagaaaacag ccgcgtatat cagccaatac
481 gatttacaca ttcctgagat gactgtgagg gagactttgg acttctcatc acggtgccaa
541 ggtgttggaa gaagaccaaa aatactcaag gaggtgagcg cgagggagag cgcggcgggg
601 atcatacctg atgcggacat agatatatac atgaaggcta tatcagttga agcttcaaag
661 agaagcctac agacagacta tattttgaag atcatggggc tagagatatg cgcagacacg
721 atggttgggg atgcaatgat aagaggacta tcaggggggc agaagaaaag attaaccaca
781 gctgagatga ttgtggggcc tgcaagagca tactttatgg atgaaatatc aaatggtctg
841 gatagctcta ccacttttca aataataagt tgtttccagc aactgacgaa catcagcgag
901 tacaccatgg ttatttcact tcttcaacca acacctgagg tatttgatct ttttgatgac
961 ctgatattaa tggcagaagg gaaaattata taccatggcc ctcgaaatga agctctgaat
1021 ttttttgagg agtgtgggtt catatgccca gaaagaaaag aggtagctga ctttctccaa
1081 gagatcttgt cctgcaagga ccaacaacag tactggtctg gtccaaatga atcttacaga
1141 tatatatcac cccatgaatt atcaagcatg ttcaaggaaa atcacagagg gagaaaacta
1201 gaagaaccaa ttgtttctcc gaaaagcgag ttgggcaagg aagctttagc attcaataaa
1261 tattctctgc aaaaactgga aatgttcaaa gcctgtggag caagggaagc actcctaatg
1321 aaaaggagta tgtttgttta tgtcttcaaa acaggccagc ttgccattat tgcactcgta
1381 acaatgtctg tgttccttcg aactcgcatg acaacagatt tcactcacgc aacttactat
1441 atgggagcat tgtttttttc catcttaatg atcatgctaa atggcacacc agagataagc
1501 atgcagatta ggagactccc aagtttttac aagcaaaaga gctattattt ctattcttca
1561 tgggcatatg caataccagc ttcagtccta aaggtccctg tttccatatt agattcactt
1621 gtatggatat gtatcacata ttacggtatt ggttatacag ctagtgtttc gaggttcttc
1681 tgccaatttc tgatgctttg ttttgtccat caatcagtca cttcgctgta tcgatttatt
1741 gcttcatact tccaaacacc tactgcgtct ttcttctacc tttttctggc tctaacattc
1801 ttcctcatgt ttggaggctt cactcttccc aagccctcca tgccaggatg gttaaactgg
1861 ggattttgga tttctccaat gacatatgca gaaatcggca cagttattaa tgaattccaa
1921 gcgccaagat ggcagaagga aactattcaa aacataacaa ttgggaaccg aatcctgatt
1981 aatcatggcc tatattacag ttggcacttt tattggatat ccattggagc attgttcgga
2041 tccatcattt tattttatat cgcttttgga ttggcgctag attatattac atctatagaa
2101 gaatatcatg gaagtaggcc tataaagagg ttatgtcaag aacaggaaaa agattctaat
2161 atacgaaaag aatctgatgg tcattcaaat atttccagag caaagatgac tatacctgtt
2221 atggaacttc caattacgtt ccacaatctg aactactaca ttgatacccc accggaaatg
2281 ctgaaacaag gctatccaac aaaaagactt caactactta acaacataac tggtgcattg
2341 cgtcccggtg ttctttctgc actaatgggt gtcagtggag ccgggaagac aactctgcta
2401 gatgtattag caggaaggaa aacaggagga tatattgaag gggacataag aataggtgga
2461 tatcccaagg tgcaagaaac atttgttaga atcttaggtt actgtgagca agccgacata
2521 cattccccac agctcacagt tgaagagtct gtaacttatt ctgcttggct tcgtctacct
2581 tctcatgtcg acaaaaaaac aagatctgta tgtcccttgg aagttggaac aacacagaca
2641 tatactgatt ttaataacag atagataaac aagaagctta cct
//