LOCUS AK102948 2464 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033115B22, full insert
sequence.
ACCESSION AK102948
VERSION AK102948.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2464)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2464
/clone="J033115B22"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2464
/db_xref="Osa1:LOC_Os05g48060"
/note="(Rice Genome Annotation Project)
phosphatidylserine synthase 2, putative, expressed"
/note="mapping to R05-TIGRv4S1-001048F (Chr.5: short
arm=27469678, long arm=27474950, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 592 a 482 c 571 g 819 t
ORIGIN
1 ttggggctct gaagtaatcc ttcgcttctg cttctttctt cttctgcatg tcctgtctgt
61 ccccctcgtc tcgtctcgtc tcgtctcgtc tcttgctttc gcctctcctg acctgaccgc
121 gacaatccgt ggtggttata tcgcgcaggc gcttcgcttg gtttggcgtg ttgtttggct
181 gccgcggcag ttttctcctg tcacatatcg cagagggttc tggaagtggg aacatggagg
241 cgaagcagag gacgaggcat cgcgacggag aggagaggag gctcgtagcg gcggcggatg
301 gcggcgccga ggagtacgac ccatggacgg cgtggctcta caagccgcac accatctcgg
361 tgctcctcgt cggtgcttgc cttctaattt gggcaagtgg agcgcttgat ccagagggtg
421 cttcttatca cagtagtgcg acatctatta agaggggtgt ctgggctatg attgcagtct
481 tccttgctta ctgcactctc caagcacctt caacgatact tattaggccc catcctgctg
541 tctggcgcct ggtgcacgga ctggctgtcg tttaccttgt cgctctagcc tttcttcttt
601 tccagaaccg cgatgatgct cgccagttca tgaaacacct ttaccctgat cttggagttg
661 aattgccgga gagatcttat ggagctgact gccgtctgta tgttccggaa aaccctaaaa
721 acaagttcat aaatatttat gtatgatttt tcatttgaac cttcctattt catgctctgg
781 tttttgttat tattgtagtt attatcattg ttattacccc atcatatttg acggtttgat
841 atacatatag gagacattat ttgacgaatt tgtggttgcc catattttgg gttggtgggg
901 taaagccgta atgatacgaa accagcttct tctttgggtc ctctcgattg gtttcgagct
961 aatggaggtt agatatggtt actcaacctt ttgttatctt ttacttgtta tctctaacaa
1021 ggtattgtgc ttattatgac cttttgcagc ttacattcag acctatgttg ccaaacttta
1081 atgagtgctg gtgggatagt attattttgg atatcttgat ctgcaactgg tttggtagga
1141 caatcggaga cagctgactt tcatgttgta tacattcagt gacattgatg atacattttt
1201 tacatctaaa gttattagta aaacaaagtt aggcagatta aaataatata gtgtttttgg
1261 gtttgcatat tttatacagt ttgtttggat ctaactctta tcaactgaac atgataatat
1321 agaaaatgaa tagcgatgtg atgtatctga gagttttaag aagaaaactt agacctgatg
1381 cacatgcata ctgctgacat taaacactta ctgtttatga agtaatataa tttatcttct
1441 tctatcagtt catgggttga aagcaatctt tctatttcag taaccagtta ttgaaagagt
1501 acctgcatat gcacgttagg gtcaaaagtg acaagtaaat gtgaatggag gaagaacaaa
1561 tctgccatat aagcctcact cttagcagta ggctatggag tgttttatgt gttcagcttc
1621 atctaaatat tttggctgaa atgctaatat tcttattcag gtatatgggc ggggatgcac
1681 acagtccgtt actttgacgg taaaacatat gagtgggttg gactgagccg acagccaagc
1741 atcatgggca aggtgaaaag atcactgagc ctgttcaccc ctgcacaatg ggacaaggat
1801 caatggtacc ctttcatggg gccgttgcgg ttcgttcaag tgttgttcct gtgcgttgtt
1861 ttcatgacag tggagctcaa cacatttttt cttaaatttt gcctctggat tcctccaagg
1921 aatcctttgg ttgtgtacag attaatccta tggtggttga ttgctattcc aaccatccgt
1981 gagtacaact cctacttgca aaacagcaaa ccggtgaaga aggttggggc tttttgctgg
2041 ctctctctag ctatatgcat tgtagagctt cttatatgta tgaagtttgg acatgggctg
2101 tttcatgatc ccatgcctac ttggttgatc atcttttgga gttcggtggg ggtagcacta
2161 gtggttttct tgcttgcatg gtcttggagg aatcacctga aatatcagag aaagcggcta
2221 taatggatta atttttcgga agattttcga ctctggaccc ccttcaaact tgtttcttct
2281 tcttgatagg atgtacatat gtgatgggtg atgatgtaac ttaaatgtga tgggtaatta
2341 tgtaacttta aatcctagga taaagcaatt ttcagctaca tttcacatta tgttttacaa
2401 tagccaattg ttgcctcgca agagggatgg ctaatttcag attaataagt gaaatattac
2461 catg
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