LOCUS AK102937 2977 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033114J19, full insert
sequence.
ACCESSION AK102937
VERSION AK102937.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2977)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2977
/clone="J033114J19"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2977
/db_xref="Osa1:LOC_Os05g14590"
/db_xref="RAP-DB:Os05g0235800"
/note="(RAP Annotation release2) MCM protein 6 family
protein"
/note="(Rice Genome Annotation Project) DNA replication
licensing factor MCM6, putative, expressed"
/note="mapping to R05-TIGRv4S1-000339F (Chr.5: short
arm=8292207, long arm=8298700, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 847 a 617 c 787 g 726 t
ORIGIN
1 gtcttgttcc cccaaccaaa accctcgcgc ccccgccgca ccacccgcgc agccgcacag
61 cgcaaatccc ccccaccccg cgcaaggttt cgagaggtct cgtcggagat ggaggcgttc
121 ggcgggttct tcgtggacga gaaggcggcg cgggtggaga acatcttcct cgagttcctc
181 aggcggttca aggaggcgga tgcggcggag gcgttctacg agacggagct ggaggcgatg
241 cggtcgcggg agtccaccac catgtacgtc gacttcgccc acgtcatgcg attcaacgac
301 gtcctccaga aggccatctc cgaggagtat ctcaggttcg agccgtacct ccggaatgcg
361 tgcaagaggt ttgtgatgga gcagaggact ggcgagaacc gtgcaccaat catctctgat
421 gatagcccta acaaggacat taacattgcc ttctacaaca taccaatgct gaagaggttg
481 agggagcttg gaacagcaga gattggtaag ctcacggctg taatgggggt ggttacacgg
541 acaagtgagg tccggcctga gttactgcaa ggcaccttca agtgccttga ctgtggaaat
601 gttgtaaaga atgttgagca gcagttcaag tatactgagc caataatatg tgtcaatgca
661 acatgccaaa atcgatcaaa atgggccctt ctccgacaag agagcaagtt cacagattgg
721 cagcgggtca ggatgcagga gacatcaaaa gaaatacctg ctggttcact accacgctcc
781 ctggatgtca ttctgaggca tgagattgtt gagaaggcta gagctggaga cacggtcata
841 tttactggaa ctgttgttgc tgttcctgat gttatggctc taacttcacc tggtgagaga
901 gcagagtgtc gccgggaggc tcctcagcga aagaatgggt ctggtgtcca agaaggtgtc
961 aagggcttga aatcactagg agtacgagat ctgtcatatc gccttgcttt tgtagcaaac
1021 tcagtgcagg tggcggatgg aaggagagaa gtcgacatcc gggacaggga catagatgga
1081 gatgacagcg aaagacagaa gttcactgaa gaagaggaag atgaagttgt taggatgagg
1141 aacgttcctg attttttcaa taagatagtt gatagcatat gtcccactgt ctttgggcat
1201 caagaaatta agagagcaat ccttctcatg cttttgggtg gtgttcacaa gataacacat
1261 gaagggataa accttagagg tgacatcaat gtctgtattg ttggtgatcc aagttgtgcg
1321 aagtctcagt tcttaaaata taccgctggt attgttccac gatctgttta cacatcaggg
1381 aagtcctcat ctgctgctgg tttgacagca actgttgcta aagaaccaga gactggcgaa
1441 ttttgcattg aggcaggagc actcatgtta gctgataatg gcatctgctg cattgatgaa
1501 tttgataaaa tggacatcaa aggtcaggtt gctatacatg aagcaatgga acagcaaacc
1561 attagcataa caaaagcagg aatacaagca actttgaatg caaggacttc aattttggca
1621 gcagcaaatc ccacaggagg gcgttatgac aagtcaaaac cactcaagta taacgtggca
1681 ttgcctccag ctattctttc aagatttgat ctggtataca taatgatcga tgagcctgat
1741 gaaaacactg actaccacat tgctcatcac attgtgaggg tccatcagaa acgtgaagaa
1801 gcacttgccc ctgcatttag cacggcagaa ttgaaacgtt acattgcttt tgcgaagtcc
1861 ttgaaacctc agctgagttc tgaagcaaag aaagttctgg ttgaatcata tgttaccctt
1921 cgtagaggag atagtacccc tggtactagg gttgcttata ggatgacagt taggcaacta
1981 gaggcattaa tcaggctttc agaagctatt gcccgaagtc atttggaaag agttgttctc
2041 ccagcccatg ttcgcatggc agttaaattg ctcaagacat ccatcatcag cgtggaatca
2101 agtgaagttg atctctctga tttccaagat gctgatgatg gcacaaatgt accagccgat
2161 aatgatgctg gtcagccaac agaaatggat gctgctcctc aacaagacgg tccagaaaat
2221 gagcaagcgg cagatactgg taagaagaag ttggttataa ccgaagaaca tttccagaga
2281 gtcacgcaag ctttagttat gagactacgg cagcatgaag agtctgtcac gaaagatgga
2341 gatggtctgg ctggcatgaa gcaaggggat ctgataattt ggtatgttga gcagcagaat
2401 gcccaaggag cctatagttc tacagcagag gtgaaggaag aagtgaagtg catcaaggcc
2461 atcatagaga ggttaataca gagggatggc catctcatag tgatagacga aggagcagcc
2521 ccagcggctg acgacggtgc tgcacgaaga acatcagaga gcagaatcct ggcagttaat
2581 ccgaactatg tcatcgatta accatctgaa ttatggtacg cagctaacac aatccaatcg
2641 atgtggttaa ccgatagaac caagagtaga ttctagtgag aacccctggt gggttatgct
2701 atgcactaga catgtaccat ttccaactgt ggtagtcttt gcaattgagt atatgatctc
2761 ttgacaaatt gtacaattaa ttcttggaag caaaggtgta gtcagagtta tagttgatga
2821 taactataat cggtagtgtg cctgtgtaca ttttcttaga gttggttgaa ctatgtgagg
2881 gctttggagt ttggagaagc ttgaattttc aagtgcttgc tgtgcttcta acgtgtatca
2941 ttcagattca gatgattcga gaaacgtacc tttggct
//