LOCUS       AK102904                2113 bp    mRNA    linear   PLN 04-DEC-2008
DEFINITION  Oryza sativa Japonica Group cDNA clone:J033113E20, full insert
            sequence.
ACCESSION   AK102904
VERSION     AK102904.1
KEYWORDS    CAP trapper; FLI_CDNA.
SOURCE      Oryza sativa Japonica Group (Japanese rice)
  ORGANISM  Oryza sativa Japonica Group
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
            clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE   1  (bases 1 to 2113)
  AUTHORS   Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
            Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
            Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
            Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
            Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
            Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
            Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
            Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
            Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
            Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
            Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
            Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
            Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
            Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
            Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
            Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
            Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
            Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
            Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
            Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
            Yazaki,J., Yokomizo,S. and Yoshimura,A.
  TITLE     Direct Submission
  JOURNAL   Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
            Contact:Shoshi Kikuchi
            National Institute of Agrobiological Sciences, Department of
            Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
            Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE   2
  AUTHORS   The Rice Full-Length cDNA Consortium, National Institute of
            Agrobiological Sciences Rice Full-Length cDNA Project Team:,
            Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
            Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
            Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
            Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
            International Science Genome Sequencing & Analysis Group:,
            Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
            Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
            Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
            Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
            Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
            RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
            Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
            Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
            Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
            Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
  TITLE     Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
            from japonica Rice
  JOURNAL   Science 301, 376-379 (2003)
COMMENT     This clone is one of the 28K full-length cDNA clones from japonica
            rice.
            URL : http://cdna01.dna.affrc.go.jp/cDNA/
            
            NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
            Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
            Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
            Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
            and Yamamoto,M.
            
            FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
            Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
            Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
            Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
            Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
            Yoshimura,A., Matsubara,K. and Murakami,K.
            
            Genome Exploration Research Group in Riken Genomic Sciences Center
            and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
            Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
            Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
            Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
            Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
            Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
            Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
            Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
            Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
            Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
            Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
            Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
            Yasunishi,A. and Hayashizaki,Y.
FEATURES             Location/Qualifiers
     source          1..2113
                     /clone="J033113E20"
                     /cultivar="Nipponbare"
                     /db_xref="taxon:39947"
                     /mol_type="mRNA"
                     /organism="Oryza sativa Japonica Group"
     misc_feature    1..2113
                     /note="mapping to R09-TIGRv4S1-000426F (Chr.9: short
                     arm=16411082, long arm=16414850, direction=forward) for
                     TIGR Pseudomol ver4"
BASE COUNT          455 a          499 c          522 g          637 t
ORIGIN      
        1 gggagaaaag aagagcgtgg gcatggacaa ctgacctgag tggccttgtc agggagagcc
       61 atagcagtgg acgtgtctat ctccgccatt gcttcgtcga cactggacgt gcagacggca
      121 tggccatgag ggctttgcac gatgggtggt gccgtgttgg tgttatgggc tgccaccatg
      181 gtttgaggct tttgatgttg ctagattttg tgtttaacga gggagggaag aatgtgttgt
      241 tcttgacact gtgctgtgct tttaaggagc agagatttca gaagctcttc agatatcaga
      301 gaacttcttt gtagtagtaa tcaaatgcgc tttagacatc tttttatcgt ttcttgcaag
      361 gtcagtccct gctttggtac ccgatctcgc ttttgtgcaa catcaaagtt acacttacac
      421 agtaaagcag gaatctttat gggaccgttc gtactggtca attactccag gctttgatta
      481 atgggtttta agttttaacc gcagatttgg tacaagtaac aacctttatt tactttttat
      541 ttctgcaact gtgtctttta acatgaaaga atccagctcc attcaaaagt ttagttttta
      601 ttttccattg tggtgcatgg tcactcagcc tgcagtactg aattatcaaa attttctttt
      661 gtcatttctc tcatgttaag tgcatagtct attttacttc aacaggtaga aaaacttttg
      721 tgggtttgtt tctagctcaa ggaggaaatt catgggtttg catctagcac atgagagaac
      781 aatattggtc taacacaaag ctccttttgt aggatgagct tcacttcctt gaaggagctc
      841 agcccgtttc tcgttctgga tgcattaaag agataaatga gtttgttggt acaaaacatg
      901 acccactaat accaacaaag agaaggaggc acagatcttg ccgtcttttt cggtggatcg
      961 gatcaaaatt gtgtatctgc atttcatgtc tttgctactg ttgcaagtgc tcacccaagt
     1021 gcaaaagacc aaggtgcctc aattgttctt gcagctcatg ctgcgacgag ccatgctgta
     1081 agccaaactg cagtgcgtgc tgcgctgggt catgctgtag tccagactgc tgctcatgct
     1141 gtaaacctaa ctgcagttgc tgcaagaccc cttcttgctg caaaccgaac tgctcgtgct
     1201 cctgtccaag ctgcagctca tgctgcgata catcgtgctg caaaccgagc tgcacctgct
     1261 tcaacatctt ttcatgcttc aaatccctgt acagctgctt caagatccct tcatgcttca
     1321 agtcccagtg caactgctct agccccaatt gctgcacttg cacccttcca agctgtagct
     1381 gcaagggctg tgcctgtcca agctgtggat gcaacggctg tggctgtcca agctgcggat
     1441 gcaacggttg tggctgtcca agctgcggtt gcaacggctg tggccttcca agctgcggtt
     1501 gcaacggctg cggctcgtgc tcttgcgccc aatgcaaacc cgattgtggc tcgtgctcta
     1561 ccaattgctg tagctgcaag ccaagctgca acggctgctg cggcgagcag tgctgccgct
     1621 gcgcggactg cttctcctgc tcgtgccctc gttgctccag ctgcttcaac atcttcaaat
     1681 gctcctgcgc tggctgctgc tcgagcctgt gcaagtgccc ctgcacgacg cagtgcttca
     1741 gctgccagtc gtcatgctgc aagcggcagc cttcgtgctg caagtgccag tcgtcttgct
     1801 gcgaggggca gccttcctgc tgcgagggac actgctgcag cctcccgaaa ccgtcgtgcc
     1861 ctgaatgttc ctgtgggtgt gtctggtctt gcaagaattg tacagagggt tgtcgatgcc
     1921 cacggtgtcg taacccatgc tgtctcagtg gttgcttatg ttgatctaga tccttttttg
     1981 gttgttgttt ttcttgtatt ttttagttgt taggcctttg attaagttcg aactttcata
     2041 aatatatggt gtttatcctg taaagaaatg atgatttcaa ggatttttca tagctatgag
     2101 acgaggttga acc
//