LOCUS AK102904 2113 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033113E20, full insert sequence. ACCESSION AK102904 VERSION AK102904.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 2113) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..2113 /clone="J033113E20" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" misc_feature 1..2113 /note="mapping to R09-TIGRv4S1-000426F (Chr.9: short arm=16411082, long arm=16414850, direction=forward) for TIGR Pseudomol ver4" BASE COUNT 455 a 499 c 522 g 637 t ORIGIN 1 gggagaaaag aagagcgtgg gcatggacaa ctgacctgag tggccttgtc agggagagcc 61 atagcagtgg acgtgtctat ctccgccatt gcttcgtcga cactggacgt gcagacggca 121 tggccatgag ggctttgcac gatgggtggt gccgtgttgg tgttatgggc tgccaccatg 181 gtttgaggct tttgatgttg ctagattttg tgtttaacga gggagggaag aatgtgttgt 241 tcttgacact gtgctgtgct tttaaggagc agagatttca gaagctcttc agatatcaga 301 gaacttcttt gtagtagtaa tcaaatgcgc tttagacatc tttttatcgt ttcttgcaag 361 gtcagtccct gctttggtac ccgatctcgc ttttgtgcaa catcaaagtt acacttacac 421 agtaaagcag gaatctttat gggaccgttc gtactggtca attactccag gctttgatta 481 atgggtttta agttttaacc gcagatttgg tacaagtaac aacctttatt tactttttat 541 ttctgcaact gtgtctttta acatgaaaga atccagctcc attcaaaagt ttagttttta 601 ttttccattg tggtgcatgg tcactcagcc tgcagtactg aattatcaaa attttctttt 661 gtcatttctc tcatgttaag tgcatagtct attttacttc aacaggtaga aaaacttttg 721 tgggtttgtt tctagctcaa ggaggaaatt catgggtttg catctagcac atgagagaac 781 aatattggtc taacacaaag ctccttttgt aggatgagct tcacttcctt gaaggagctc 841 agcccgtttc tcgttctgga tgcattaaag agataaatga gtttgttggt acaaaacatg 901 acccactaat accaacaaag agaaggaggc acagatcttg ccgtcttttt cggtggatcg 961 gatcaaaatt gtgtatctgc atttcatgtc tttgctactg ttgcaagtgc tcacccaagt 1021 gcaaaagacc aaggtgcctc aattgttctt gcagctcatg ctgcgacgag ccatgctgta 1081 agccaaactg cagtgcgtgc tgcgctgggt catgctgtag tccagactgc tgctcatgct 1141 gtaaacctaa ctgcagttgc tgcaagaccc cttcttgctg caaaccgaac tgctcgtgct 1201 cctgtccaag ctgcagctca tgctgcgata catcgtgctg caaaccgagc tgcacctgct 1261 tcaacatctt ttcatgcttc aaatccctgt acagctgctt caagatccct tcatgcttca 1321 agtcccagtg caactgctct agccccaatt gctgcacttg cacccttcca agctgtagct 1381 gcaagggctg tgcctgtcca agctgtggat gcaacggctg tggctgtcca agctgcggat 1441 gcaacggttg tggctgtcca agctgcggtt gcaacggctg tggccttcca agctgcggtt 1501 gcaacggctg cggctcgtgc tcttgcgccc aatgcaaacc cgattgtggc tcgtgctcta 1561 ccaattgctg tagctgcaag ccaagctgca acggctgctg cggcgagcag tgctgccgct 1621 gcgcggactg cttctcctgc tcgtgccctc gttgctccag ctgcttcaac atcttcaaat 1681 gctcctgcgc tggctgctgc tcgagcctgt gcaagtgccc ctgcacgacg cagtgcttca 1741 gctgccagtc gtcatgctgc aagcggcagc cttcgtgctg caagtgccag tcgtcttgct 1801 gcgaggggca gccttcctgc tgcgagggac actgctgcag cctcccgaaa ccgtcgtgcc 1861 ctgaatgttc ctgtgggtgt gtctggtctt gcaagaattg tacagagggt tgtcgatgcc 1921 cacggtgtcg taacccatgc tgtctcagtg gttgcttatg ttgatctaga tccttttttg 1981 gttgttgttt ttcttgtatt ttttagttgt taggcctttg attaagttcg aactttcata 2041 aatatatggt gtttatcctg taaagaaatg atgatttcaa ggatttttca tagctatgag 2101 acgaggttga acc //