LOCUS AK102869 1993 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033111O12, full insert
sequence.
ACCESSION AK102869
VERSION AK102869.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1993)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1993
/clone="J033111O12"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..1993
/db_xref="Osa1:LOC_Os09g33680"
/note="(Rice Genome Annotation Project) cyanogenic
beta-glucosidase precursor, putative, expressed"
/note="mapping to R09-TIGRv4S1-000643R (Chr.9: short
arm=19882228, long arm=19887534, direction=reverse) for
TIGR Pseudomol ver4"
BASE COUNT 475 a 494 c 533 g 491 t
ORIGIN
1 gggccaccga ggacgagcta gagcgcgcgc gccgccgcga aacattagct atagctagct
61 agatatagcc ggccggcgat cgaggagatc gatcgatcga acgccgccgc gcgcgcgcgg
121 tcatgacgcc ggcgagggtg gtgttcatct gctgcgttgt tctgctcgcc gccgccgccg
181 cggcggcgtc gtcgtcgacg gcggcgggga tcaccagggc cgacttcccg ccggagttca
241 tcttcggcgc cggctcctcc gcttatcagg ttgaaggtgc atttgcagag gatggaagaa
301 agcctagtat ctgggacacg ttttcgcact caggctattc tgttgatgga gcaaccggtg
361 atgtaactgc agatcagtat cataagtaca aggaagatgt aaagcttttg caagacatgg
421 gcgttgacgc gtacaggatg tccatttctt ggtctcggct tattcctgat gggcgaggag
481 ctgtcaatcc gaagggactg gaatactata acaacctgat tgatgaactt ctgagccatg
541 gaatccaacc tcacgtaacg atatatcatt tcgattttcc tcaggctctc caagatgaat
601 acaatgggat acttagtcct agatttgtag aggacttcac agcatacgcg gatgtctgct
661 tcaagaactt tggtgataga gtgaagcact ggagcactgt caatgagcct aacatcgatc
721 cgattggcgg atacgatcaa ggaatccttc cgccacggcg atgctcattc ccctttggtg
781 tcctcagttg tgacaatggc aactctacca cagagccata catagtagca catcatcttc
841 ttcttgcaca ttcctcagca gtgtccctct acagagagaa gtaccaggcc actcaaggag
901 gacaaattgg gctcacattg ctcggttggt ggtacgagcc cgggacgcaa gatcctgaag
961 atgtagcagc agctgcaagg atgaatgatt tccacattgg atggtacatg catcctttgg
1021 tgtacggtga ctaccctccg gtaatgagga agaatgttgg gtccaggcta ccatctttca
1081 cagctgaaga atcaaagaga gtacttgaat cctatgattt tgtcggattt aaccactatg
1141 tcgccatttt tgtgagagcc gaccttagca aacttgatca gagcctcaga gattacatga
1201 gcgatgcagc tgtcaaatat gacctcccat tcctgaaatc aaataatgag ttcccactcg
1261 ggttgacgag tgacttcatg acgtcgaccc catgggctct gaagaagatg ctcaatcatc
1321 tccaagagaa gtacaagaac cctattgtca tgatccatga gaatggagcc gctgggcagc
1381 ctgacccttc aggcggaaac acctacgacg acgatttcag gtcgcaatat ctgcaggatt
1441 acatcgaggc cacacttcaa tccatcagga acgggtcgaa cgtgcagggc tacttcgtgt
1501 ggtcgttcct ggacgtgttc gagtacctgt tcggctaccg cctccgcttc ggcctctacg
1561 gcgtcgactt cgcctcgccg gagaggacca ggtaccagag gcactcggcg cggtggtacg
1621 ccggcttcct ccgcggcggc gagctccggc cggcggcggc ggcgctggcc ggcggcggag
1681 cctactccca gtgatcaagg ttcttcttcc tcgcacgctt tcatctcgcg aagaacagga
1741 caggacggga caataaaatt tacctggata gatacagaag aattatacag ttcatatgga
1801 agttgatctt ttgaataggg tcttagaatg aatggtctct cttcttcccc tggtttttgg
1861 ttcttctgtt tacagaccaa tgatgggtca atgtcagtca aattgtgtga tttagatcaa
1921 tgggtcaaag tgtatgatgt gattgtgtaa ttgtgtcgat tatatataaa attttgaagt
1981 ctctcgtagt ttg
//