LOCUS AK102794 1553 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033108B03, full insert
sequence.
ACCESSION AK102794
VERSION AK102794.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1553)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1553
/clone="J033108B03"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 184..1185
/db_xref="Osa1:LOC_Os01g48130"
/db_xref="RAP-DB:Os01g0672100"
/note="(RAP Annotation release2) No apical meristem (NAM)
protein domain containing protein"
/note="(Rice Genome Annotation Project) ANAC010,
putative, expressed"
/note="mapping to R01-TIGRv4S1-001111R (Chr.1: short
arm=27882874, long arm=27887528, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95722.1"
/translation="MTWCNSFNDVRAVENNLATAAAVAAAKKQQQQQQVSQHVNLIKT
CPSCGHRAQYEQAAAAATIQDLPGLPAGVKFDPTDQELLEHLEGKARPDARKLHPLID
EFIPTIEGENGICYTHPERLPGVGKDGLIRHFFHRPSKAYTTGTRKRRKVHTDEQGGE
TRWHKTGKTRPVFTGGKLKGYKKILVLYTNYGKQRKPEKTNWVMHQYHLGSDEEEKDG
ELVVSKVFYQTQPRQCGGGSAATAKDLSVDLVAGNNIKASNAAAEHHHNDGVGGGGHG
GNNSSMLKEAAGIVDFYNPAAALIGYSQAAPNNRAAASAHLTMPNFEVHTGGAGFGP"
BASE COUNT 375 a 416 c 463 g 299 t
ORIGIN
1 ggttccctcc tctcctcctt tctctctccc tcctcccgcg cgcggggtct cgccttaacg
61 tttgccgcat atgggggcga cgagcaaagc gtaggccgga gggagggaca gggagagaga
121 gagagagagg ctttctggct cgctctctct gcacgatctc tcgtcttgtt ggattataca
181 gccatgacat ggtgcaacag cttcaacgac gtgcgcgccg tggagaacaa cctggccacc
241 gccgccgccg tggccgcggc caagaagcag cagcagcagc agcaggtctc ccagcacgtc
301 aacctcatca agacctgccc ctcctgcggc caccgcgcgc agtatgagca ggcagcggcg
361 gcggcgacga tccaggacct gccggggctg ccggccgggg tgaagttcga cccgacggac
421 caggagctgc tggagcacct ggaagggaag gcgaggcctg acgcgcggaa gctccacccc
481 ctcatcgacg agttcatccc caccatcgag ggcgagaacg gcatctgcta cacccatccc
541 gagaggcttc caggagtcgg caaggacggc ctgatccggc acttcttcca ccgcccgtcg
601 aaggcgtaca cgacggggac gcggaagcgg cggaaggtgc acaccgacga gcagggcggc
661 gagacgcggt ggcacaagac cggcaagacg cggccggtgt tcaccggcgg caagctgaag
721 gggtacaaga agatcctggt gctctacacc aactacggca agcagcgcaa gccggagaag
781 accaactggg tgatgcacca gtaccacctg ggctccgacg aggaggagaa ggacggcgag
841 ctcgtcgtgt ccaaggtgtt ctaccagacg cagccgaggc agtgcggcgg cggctcggca
901 gcgacggcca aggacctctc cgtcgacctc gtcgccggta acaacatcaa ggctagcaat
961 gctgctgctg aacaccacca taacgacggc gtcggcggcg gcggccacgg tggcaacaac
1021 agcagcatgc tgaaggaagc tgcaggcatt gtagatttct acaacccagc ggcggcgcta
1081 atcggctaca gccaggcggc tcctaacaac agggcggctg cttctgctca tttgacgatg
1141 cctaactttg aggtgcacac aggaggtgca ggctttggcc cctgatggat ggaagaaaac
1201 aaagcaaatt aaacatattt gactgatgat atatataggt tagatggaga gggcagggca
1261 ggtatatgat ggcaaatgtg catcatgcat gctagcatgg tgtaatttgc atcgagtgaa
1321 aaaaaaggag tttactaaac cgtctacgta cgtattactg gacaataagg agtgtgtcga
1381 gtgagttgct gcacagatgt tgaagcgtag gggggtcgat attcttacag tgttcattat
1441 tgttacatgt gtacacatat ataacttgac attctcaatt tttttgttta atgatatata
1501 tatatatata tatatatata tatatatata tatatatata tatgttgttc tat
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