LOCUS AK102709 2099 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033104H23, full insert
sequence.
ACCESSION AK102709
VERSION AK102709.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2099)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2099
/clone="J033104H23"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 55..1686
/db_xref="Osa1:LOC_Os10g42190"
/note="(Rice Genome Annotation Project) protein lap4,
putative, expressed"
/note="mapping to R10-TIGRv4S1-000775F (Chr.10: short
arm=22361102, long arm=22365458, direction=forward) for
TIGR Pseudomol ver4"
/protein_id="BAG95685.1"
/translation="MASAAEAVEELTRLYRELPPRPAVEEVEAAEAVLASADAEEAAR
LDEVAREEASASASSSAAAPGRADGELLAVLREARRNAVRLRALQQRKEAAYVVELER
RFKVFDDLIQRASRVVSSSSDAAEAGGGTTGDGYVGVGADSVDLEMELRKKEAAVAAA
AAVAEMERGSKGLAALGLESKPISSLRRDVSAGTDMEKLSLIQVASLIESSAKKGITE
LSLRGKLVDQIEWLPVSLGKLQDVTELDLSENRIMALPSTIGSLRYLTKLDLHSNQLI
NLPDAFGELSNLIDLDLHANQLKSLPSSFGNLTSLANLDLSSNMLKALPDCLGKLANL
RRLIVETNELEELPYTIGSCTSLVELRLDFNQLKALPEAIGKLEKLEILTLHYNRIKG
LPTTVGSLSRLRELDVSFNEVEVIPENICFATSLVKLNLSRNFADLRALPKSIGNLEM
LEELDISSNQIRVLPDSFRCLSRLRVFHADETPLEFPPREVVKLGAQAVVKYMNDLNA
ARGTNQKKTDRGSFWTWLFSLFGCCKKNQEVGLPV"
BASE COUNT 533 a 483 c 582 g 501 t
ORIGIN
1 gtctctcatc tctcgtcgtt ttctctctcc tcgatcgagg gcacgcgacg cgccatggcg
61 tcggcggcgg aggcggtgga ggagctcacg aggctgtacc gggagctccc gccgcgcccc
121 gccgtcgagg aggtggaggc ggcggaggcc gtgctggcct cggccgacgc ggaggaggcg
181 gcgcgcctcg atgaggtggc gcgggaggag gcctcggcct cagcgtcctc gtcggcggcg
241 gcgccggggc gggccgacgg ggagctcctc gccgtgctgc gggaggccag gcgcaacgcc
301 gtgcggctcc gcgcgctgca gcagcggaag gaggccgcgt acgtcgtcga gctcgagagg
361 cgcttcaagg tgttcgacga tttgatccag agggcgtcgc gggtggtctc ctcctcctcc
421 gacgccgccg aagcgggagg gggaaccacc ggcgatggat acgttggtgt tggtgcggac
481 agcgtggacc tggagatgga gctgaggaag aaggaggcgg cggttgcggc cgcggccgcc
541 gtcgcggaga tggagcgcgg aagcaagggt ctcgctgccc tgggcttgga gtccaagccc
601 atctcctcgc tacgccgtga tgtctctgca ggtactgaca tggaaaaatt gagccttatc
661 caagtggcaa gcctgataga gtcatcagca aagaaaggga tcacagaact cagcctccgg
721 gggaaactgg tcgaccagat cgagtggctc cctgtttcac tcggcaaatt gcaagatgtt
781 accgagcttg atctttccga gaataggatc atggcactcc catcaacaat tggcagcctt
841 agatatttga caaagcttga cctacactca aatcagctga tcaatctgcc cgacgcgttt
901 ggggaactct ccaacctaat tgatcttgac ctgcatgcca accagcttaa gtctcttcct
961 tcatcatttg gaaatctcac gagcctagca aaccttgacc tgagctcaaa tatgttgaag
1021 gctcttccag attgtttagg aaaattggca aacttgagaa gattaattgt tgagacaaat
1081 gagcttgagg agctacccta tactattgga tcttgcacat ctcttgtgga gcttaggttg
1141 gatttcaatc agttaaaagc ccttccagag gccattggga agttggagaa gctggaaata
1201 ctgacattgc actataacag aatcaaagga ttgcctacaa cagtgggttc actttccaga
1261 ttgagagagc tggatgtcag ttttaatgag gttgaagtaa tccctgagaa catttgcttt
1321 gcgacaagtc ttgtgaagtt gaatctcagc aggaattttg cagacttaag agcactgccg
1381 aaatcaatag gaaatcttga gatgctagag gagctggaca taagcagtaa ccagatacgg
1441 gtactgccag attcgttcag gtgtctttcg aggctacgtg tatttcatgc tgatgagact
1501 ccacttgaat ttccaccaag agaagttgta aagttagggg ctcaggctgt ggtcaagtat
1561 atgaatgatt tgaatgctgc aagaggaaca aaccagaaga aaacagatcg gggaagcttc
1621 tggacctggc tcttctcgct gtttggttgt tgcaaaaaga accaagaagt gggattgcca
1681 gtataactga agcatttcat catctgtatg tgtgttgtga attactcagg aagagtcaag
1741 agatacaagg aaggtgaaac tattcagaaa gcaaaaaaac cagctgcgca gattagtccc
1801 tgaagctcca taaggtacac cgcaatatat ttttcaaggc cgctacacca tcctgaaaat
1861 attgataatg tttcaaaata aacttcatca tattgctatg ctccaagaca cttgtagaaa
1921 tacaaacatg gttctctaca gacattttat ttacttatgc aaacaacaaa tcttagttct
1981 gttcagcaag tctattgcat cagaatttga cctattgggt ctaatggttt tgttgtaaaa
2041 ctatattaat ttgttactgc atcaaacatg tactcaaagg tgaaggttga gtttcgttt
//