LOCUS AK102636 2118 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033099N16, full insert
sequence.
ACCESSION AK102636
VERSION AK102636.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2118)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2118
/clone="J033099N16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2118
/db_xref="Osa1:LOC_Os09g32930"
/note="(Rice Genome Annotation Project) retrotransposon
protein, putative, SINE subclass, expressed"
/note="mapping to R09-TIGRv4S1-000614F (Chr.9: short
arm=19620272, long arm=19628268, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 646 a 454 c 534 g 484 t
ORIGIN
1 gactcctctc ccctctccct tctctcatct cgcgcgcggc gcgccgccgt agagacgaaa
61 tgatgatggc tcagaagacg aaggaggcgg agatcacgga gcaggattcg ctgcttctga
121 caaggaattt gctccgcatt gctatataca acatcagcta catcagaggt ctattccctg
181 agaagtactt caatgataag tcggttccgg cactagagat gaagattaag aagctaatgc
241 ccatggatac tgagtcgagg aggttgattg attggatgga aaaaggtgtc tatgatgcac
301 tacagaagaa atatctcaag acccttctct tctgcatctg tgagaaggag gaaggcccaa
361 tgattgagga gtatgcattc tcatttagct accccaacac gagcggtgat gaagttgcaa
421 tgaacttgag ccgcacaggg agcaagaaaa acagtgctac atttaaatca aatgcagcag
481 aagtcactcc tgatcagatg aggagctctg cttgtaagat gataagaaca ctggtttcac
541 ttatgaggac cttggaccaa atgccagagg agaggaccat tctaatgaag ctgctatact
601 acgatgatgt cacacctgaa gattacgagc cacccttttt taagtgttgc gctgacaacg
661 aggccataaa tatatggaac aagaacccct tgaagatgga agttggaaat gtcaatagca
721 agcatctcgt gttagctttg aaggtcaaga gtgtccttga cccttgtgat gataacaatg
781 tcaacagtga agatgataat atgagcttgg ataatgaatc tgaccaagat aatgattttt
841 ctgacactga ggttcgccca tctgaagcag agcgttacat tgttgctcca aatgatggga
901 cttgcaaagg tcaaaatggt acaatctcag aagatgatac tcaagatcct gttcacgagg
961 aagagctaac agctcaagta agagagtgga tatgctcaag agacactgaa agtcttgagg
1021 tttcagatgt ccttgttaat ttccccgaca tatcaatgga aatggttgaa gatattatgg
1081 agaggctact taaagatggt ttactatcca gagcaaaaaa ggatagttat tctgttaata
1141 agattgctga tcctacaaca ccacacataa agaaagaggt catcatgcaa aatgtctcac
1201 ctactgaagg aactaaaaat agcaatggtg atctgatgta tatgaaggca ctgtaccatg
1261 cacttccaat ggattatgtg tcagtaggca aacttcatgg caagctagat ggggaggcca
1321 gccagaacat ggttcgtaag ttgattgaaa aaatggtgca agacggatat gtcaagaatt
1381 cagccaaccg aagactaggc aaagctgtca ttcattctga agtcaccaac agaaagctcc
1441 ttgagataaa aaagattctg gaagtcgata tagccgaaca aatggccatt gataccaatg
1501 cagaacctgg tgagcctgag cgcaaagacc acctgagtgg ccatgaaatg agagatggat
1561 cgacgatggg ttgcctccag tccgtcggat ctgacctcac ccgcacccgg gagcttccgg
1621 agccgcagca gaacgtgtcc atgcagagcg ggcaggaagc ttccacggtg gataaggatc
1681 caagcaggac tcctacaagc gtgcgcgagc aggcgtccgt ttgttccctg gagagtgggg
1741 ttctcgggca gaaggtcaga aagtctttgg ctggtgctgg cgggacgcag tgctcgcagg
1801 acaagcgatt caggaaggcc agcacggtga aggagccgat cctccagtac gtcaagcgcc
1861 agaagtccca agttcaagtt caagttcagt gagggttcgt gtcgcaagcg tcaggagcaa
1921 ctaacatcgt agttcaggtg cagaagacca caagtagata tatccatcct attcctagtt
1981 ccggtgctca agtttgtgca gatagtcaga gagcactcac gcacacgtag atatctgtcc
2041 atgccgctgt cccaaatggc aaatggagat agacgctact atgtgctaac acacactcaa
2101 attaagcatt caaaacgc
//