LOCUS AK102613 2154 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033099D14, full insert
sequence.
ACCESSION AK102613
VERSION AK102613.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2154)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2154
/clone="J033099D14"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 239..1930
/db_xref="Osa1:LOC_Os08g01420"
/note="(Rice Genome Annotation Project) PHD-finger family
protein, expressed"
/note="mapping to R08-TIGRv4S1-000018R (Chr.8: short
arm=267011, long arm=270582, direction=reverse) for TIGR
Pseudomol ver4"
/protein_id="BAG95636.1"
/translation="MGSQNRPPPPRKRQPPPPEDHLVTYKRRRSKETQPLPLMANGAN
SKKDAKAQHWISWRDTLHGFLQSPAISQGGGIQTCIRHALQHNPCLLTNGVVVHTEFK
GNPAHSQGEEAKVQHPNGAAGGKVVSADAAIQDAAAAASSEANKAMCNNALFDILVSQ
KFALLCHLLLGTFHVNKPGDVIDLEKIDAKMRNGDYAHNPALFDDDIQQMWEKFEQVG
QEMTGLASNLSTISRVSYQKQASGFSEAEVAEHRIEEISLPGAVHVVTKESTTTVQLA
PCDSSHSTIPKRTVPPGRDLCPCDGCGTKVDVEEGLICDECDTMYHFACVKLLNPDIK
QVPAIWHCSTCSFKKKELAADTTNNVAHDCLHGGNCVLCDQLELVKTEEEDPKLPIKI
ELAEEREGSSVSSMGEDNEPDLSTTALSNLCKHCGTCEDDDKRFMVCGHPYCVYKFYH
IRCLKTSQLAIEQQKKLGCWYCPSCLCRGCFQDKDDDQIVMCDGCDEGYHIYCMRPAR
NTIPKGKWYCTFCKIRRAAEGMHKYEDSVLKIHGNSKHACNVNQSKDSEGDGTEK"
BASE COUNT 552 a 554 c 531 g 517 t
ORIGIN
1 ggttttgtct ccggctccgc tcgccgcctc caaatcccgc tcctccgctg ctgctcctct
61 ctgccgcggc gaggcgagag atccgaatcc accgccaccc gcgcccaccc cgcccgcaca
121 aaccctagtt tttccggggt tttgcttccc ctccgcagct ccgctccgct ccgtccgtcg
181 tctcctcccg gcggctcggc ttgctgtcca tgctgtagcc gccccccgca ggtggctgat
241 gggctcccag aaccgccccc caccaccgcg caagaggcag ccgccgccgc cggaggacca
301 cctcgtcacc tacaagcgcc gccgctccaa agaaacacag cctttgccac tcatggccaa
361 cggcgccaat tctaagaaag acgccaaggc ccaacattgg attagctgga gggacactct
421 ccacggcttc ctccaatccc ctgctattag ccagggtgga ggaattcaga cctgcatccg
481 tcatgctctc caacacaatc cttgcttgct caccaatggt gttgttgttc acactgaatt
541 caaaggtaac ccagctcatt cccaaggaga ggaagcaaaa gtgcagcacc ctaatggtgc
601 tgctggaggc aaggtggttt ctgcagatgc tgctatacaa gatgcggctg ccgcagcttc
661 ttccgaagct aacaaggcaa tgtgtaataa tgccctcttc gacattttgg tctcccagaa
721 atttgccttg ttgtgccatt tgctacttgg gaccttccat gtcaataaac ctggtgatgt
781 catcgacttg gaaaaaatcg acgccaagat gagaaatgga gactatgccc acaaccctgc
841 actatttgac gatgatatcc agcagatgtg ggagaagttt gagcaagttg gccaagagat
901 gacaggtcta gcgagcaacc tttcaaccat ttcacgagtt tcataccaaa agcaggcttc
961 tggattttct gaagctgagg tggctgagca cagaatagag gaaataagtt tgccgggtgc
1021 tgtccacgtt gtcacaaagg agtcgactac caccgtgcag ttggccccat gtgattctag
1081 tcattctaca ataccgaaac gaactgtgcc acctggacgt gatctgtgcc cttgcgatgg
1141 ttgtggcacc aaggtagatg ttgaagaagg cctaatctgt gatgaatgtg acaccatgta
1201 ccactttgca tgtgtcaagc tactcaatcc tgatattaag caagtcccag caatctggca
1261 ttgttcaacc tgcagcttca agaaaaaaga attggctgca gataccacga ataatgttgc
1321 ccatgactgc ttgcatggtg gtaactgtgt tttgtgtgac cagctcgagc tggtgaagac
1381 agaagaagaa gatcccaagc ttcccataaa aattgaatta gctgaagaaa gagaggggag
1441 ctccgtctca agcatggggg aagacaatga accagacctg tcaacaactg ccctgtcaaa
1501 cttgtgcaaa cactgtggca catgcgaaga cgatgacaag agattcatgg tatgcggaca
1561 tccttactgc gtttacaagt tctatcatat ccgatgcctg aaaacaagcc agcttgcaat
1621 tgagcaacaa aagaagcttg gttgctggta ctgcccctct tgcctctgca gagggtgctt
1681 ccaagacaag gatgatgacc agatagtcat gtgtgatggc tgtgatgaag gttatcacat
1741 atattgcatg agaccagcac gcaacactat ccccaaaggt aagtggtact gtacattttg
1801 caagatccgc agggcagcgg aaggaatgca taagtatgag gattctgtgc tgaaaataca
1861 tgggaatagt aagcatgctt gtaatgtgaa tcagtcgaag gattctgaag gtgatggtac
1921 tgaaaagtga tcatcacaat agctttgtgg attagcttct gagctcgctt ggacaagctc
1981 aggaaaagag attctttggc cccttaggag ggctatacac cgactttgat actgaatcag
2041 ttgtgtagtt tatttaatta actgccgttg acatctacag gaagaactct tacctggtga
2101 agatggtgta tgtagtcttt tagctgggcg gaatgatgtg ttgtttactt gtcc
//