LOCUS AK102596 3859 bp mRNA linear PLN 04-DEC-2008 DEFINITION Oryza sativa Japonica Group cDNA clone:J033098J19, full insert sequence. ACCESSION AK102596 VERSION AK102596.1 KEYWORDS CAP trapper; FLI_CDNA. SOURCE Oryza sativa Japonica Group (Japanese rice) ORGANISM Oryza sativa Japonica Group Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa. REFERENCE 1 (bases 1 to 3859) AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K., Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K., Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J., Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N., Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C., Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J., Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T., Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K., Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M., Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K., Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y., Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K., Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A., Yazaki,J., Yokomizo,S. and Yoshimura,A. TITLE Direct Submission JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases. Contact:Shoshi Kikuchi National Institute of Agrobiological Sciences, Department of Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2 Kannondai, Tsukuba, Ibaraki 305-8602, Japan REFERENCE 2 AUTHORS The Rice Full-Length cDNA Consortium, National Institute of Agrobiological Sciences Rice Full-Length cDNA Project Team:, Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of International Science Genome Sequencing & Analysis Group:, Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y., Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M., Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S., Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A., Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K., RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T., Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A., Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y. TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice JOURNAL Science 301, 376-379 (2003) COMMENT This clone is one of the 28K full-length cDNA clones from japonica rice. URL : http://cdna01.dna.affrc.go.jp/cDNA/ NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T. and Yamamoto,M. FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y., Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M., Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J., Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S., Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S., Yoshimura,A., Matsubara,K. and Murakami,K. Genome Exploration Research Group in Riken Genomic Sciences Center and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K., Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y., Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J., Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M., Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M., Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N., Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T., Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K., Yasunishi,A. and Hayashizaki,Y. FEATURES Location/Qualifiers source 1..3859 /clone="J033098J19" /cultivar="Nipponbare" /db_xref="taxon:39947" /mol_type="mRNA" /organism="Oryza sativa Japonica Group" CDS 428..3454 /db_xref="Osa1:LOC_Os01g27740" /db_xref="RAP-DB:Os01g0375100" /note="(RAP Annotation release2) Similar to DnAJ-like protein slr0093" /note="(Rice Genome Annotation Project) dnaJ domain containing protein, expressed" /note="mapping to R01-TIGRv4S1-000723R (Chr.1: short arm=15801149, long arm=15805188, direction=reverse) for TIGR Pseudomol ver4" /protein_id="BAG95629.1" /translation="MMECNKEEALKARDIAAKKMESKDFVGAKRIALKAQRIFPELEN ISQMLTVCEVHCAAEAKMNGLLDFYGVLQVDVMADEATIKKQFRKLAFSLHPDKNGFA GAEAAFKLVAEAQSTLSDRTKRRAYDIKWRIASKQATQPKQGAQPAQAAQPKQCTQPP LATKRNQSAQPTHNTQQSAQPKQSTQPMQATQPKHATEPMEKTDANRASNAKEGYGSS VRPPSAGEAFWTMCVNCKTKYQYYSNVLNHKLRCQNCKKDFRAVMLNEQDVPSVFSSS AAKSAGQHCDVPKQEDCSTKFSSAANRDAKPMVNGGQHDEQMKNSASVRAGGEGTVNH TESIRKGGLEFSTLHVSSAANVGSKAGGKMTSCPTPDVAGRQNPGNRVNTSAETGVMN IPNPRRSARRKENADASIIQDTPSKKRRTILDWFSNPDSSRKKVADDNVVRADGQACE PHVSSEAHNHQKGTTSNEGNQEKRKDVAHDTNAQKKSGIPGNFSYPDPEFFDFDRCRD VSMFAVDQIWALYDDRDGMPRYYARIRRIDTTNFRVQFTWLEHDAKNEEEDKWTDEEL PVACGNFFLGKTVVSQDALMFSHIVSWVKGRKRSSYEIYPRKGEVWALYKGWSMQWSS DADKHRAYEYEAVEILSNFTVEAGAAVGPLVKIKGFVSLFAKVKEKPSFVIPPSEMLR FSHSIPFFRTKGDEKVGVAGGFLELDTASLPSNLDVAFPSVTLDSCMPVCKTMNSGFN DFTGYEQGALKENLMNEGKRKDHSLERTPVHQQSAAYSSPSTFDYPNSEFHNFEEYRS YSKFERGQIWALYSDLDQFPKYYGWVTKVDTDPFRVHLTWLEVCPQLEQENMWLEQNI PVSCGTFKIRNWRIKLDTNDAFSHLVETSQVGWKRYFEIHPQVGEIWAIYNNWAPGWV PSSKDTFEYTIGEITDCTEASTKVLLLTRVDGYRAVFKPDSVRGTLEIPTNENIRFSH LIPSFRLTKENGGKLCGFYELDPASVPDTFLFRSGR" BASE COUNT 1118 a 797 c 944 g 1000 t ORIGIN 1 gggcctcggc ctcccgtctc ctcggctcct cgcccacttc gtccgccgcc tgcgctgcgc 61 cgagacgccg ccgatcccca tcccgcgagc ggcggggccg gcctccatcc cgtgaccgcg 121 agcaggagcg ccggcgcggg gcacgtgctg ctgcttccac caatatcatc gccggtgagg 181 gcacccgatc tggaagcctt tttctctttg ccctaaccaa tagaagttcg tttccaaatc 241 aagattttgg gggttcaagt aaacccccat gcccaacgta agaacttgtt aagccatagg 301 ctctggttcc atatgagaga agatccatat gctcttttga gatagtttgg aaaatggcat 361 caaagaaagt ataagtgggt tatgtcaaga aggcctgtga ttttctagaa tcaatttggt 421 gagccgaatg atggagtgca acaaagaaga ggccctcaag gccagggata ttgctgcaaa 481 gaagatggaa agcaaagact ttgttggtgc caaaaggatc gcgcttaaag ctcaaaggat 541 ttttccagag cttgagaaca tatcccagat gttaactgtc tgtgaagtac attgtgcggc 601 agaagcaaag atgaatggac tattggactt ctatggagtt ctccaagtgg atgtaatggc 661 ggatgaagca accattaaaa agcaattccg caagcttgct ttttcgcttc accctgataa 721 aaacggtttc gctggcgctg aagctgcttt caaattagtt gcagaagctc agtcaacatt 781 gtctgatcga acaaaacggc gtgcatatga catcaaatgg agaattgcat caaagcaggc 841 tacgcaacca aagcagggtg cccaaccagc gcaggctgcc caaccaaaac agtgtacaca 901 accaccgctg gctacaaaac gaaatcagag tgcacaacca acgcataata cacagcagag 961 tgcacagcca aagcagagta cacaaccgat gcaggctact caaccgaagc atgctactga 1021 accaatggag aaaacagatg caaatagagc tagtaatgct aaggaaggat atggatcatc 1081 agttcgacca cccagtgctg gagaagcatt ctggacaatg tgtgttaact gtaaaactaa 1141 atatcagtac tactccaatg ttctgaatca taaactccgt tgtcagaact gcaaaaaaga 1201 ttttcgagca gttatgctaa atgaacagga tgtgccttct gtattctcat caagtgcagc 1261 caaaagtgca ggacaacatt gtgacgttcc caaacaagag gactgttcta cgaagttctc 1321 ttctgcagcg aatagagatg caaagcccat ggtgaatgga ggacaacatg atgaacaaat 1381 gaaaaacagt gccagtgtca gagcaggtgg tgaggggaca gttaaccata cagagtcaat 1441 cagaaaaggg ggacttgaat tttcaacact gcatgtatct tctgcagcaa atgttggtag 1501 taaggcaggg ggaaagatga catcgtgccc tactccagat gttgctggta gacaaaaccc 1561 tggtaatagg gtaaatacat cagcagagac aggtgtgatg aatattccta atccacggag 1621 atcggctagg aggaaggaaa atgctgatgc cagcatcatc caggatacgc ctagcaaaaa 1681 gaggcgaacc atattagatt ggttttcaaa tcctgactca agtcgtaaga aagtggctga 1741 tgataatgtt gtccgtgctg atggacaagc ttgtgaacct catgtctcca gcgaagcaca 1801 caaccaccag aaaggaacta ctagcaatga aggaaaccag gaaaaaagga aagatgttgc 1861 acatgataca aatgctcaga agaaatctgg cattcctggg aacttttcct atcctgaccc 1921 agaatttttt gacttcgata ggtgcaggga tgttagtatg tttgcagttg atcagatctg 1981 ggcactttat gatgaccgtg atggcatgcc acgatattat gctcgtataa gacgcattga 2041 tacaaccaac ttcagagttc agttcacttg gctggagcat gatgcaaaga atgaggaaga 2101 ggacaaatgg actgatgaag aattgcctgt ggcttgtggg aactttttct taggaaaaac 2161 agtggtgtca caagatgccc tcatgttttc tcatattgtg tcatgggtga aaggtagaaa 2221 aaggagctca tacgaaatat atcctaggaa gggtgaggta tgggctctat ataagggttg 2281 gagtatgcag tggagctcag atgcagataa gcatagagcc tatgagtatg aagctgtgga 2341 gatcttgtca aatttcacag tggaagctgg tgctgctgtt ggccctttgg taaagattaa 2401 aggttttgtg agtctctttg caaaagtaaa ggagaaacca tcattcgtta taccaccaag 2461 cgaaatgcta cggttctctc acagtatccc attttttaga acaaagggag atgagaaggt 2521 aggtgttgct ggtgggtttc ttgaactaga tactgcatca cttcctagta acttggacgt 2581 agcctttcca tcggttactc ttgattcttg catgcctgtc tgcaagacaa tgaacagtgg 2641 atttaatgat ttcactggat atgagcaagg tgcgctgaaa gaaaatttga tgaacgaagg 2701 taaacgtaaa gatcattccc ttgaacgaac cccagtgcat caacagagtg ctgcctattc 2761 ctcccccagt acttttgatt acccaaactc tgaatttcat aactttgaag aatatcgatc 2821 atatagtaag tttgaacgtg gccagatatg ggctctttac agtgatcttg atcaatttcc 2881 aaagtactat ggttgggtga ccaaagttga tacagatccg ttcagagtgc atttgacttg 2941 gctcgaagtc tgccctcagc tggagcagga gaatatgtgg ttagagcaga atattcctgt 3001 gagctgtggg acttttaaaa tccgcaactg gaggataaag ttagacacga atgatgcttt 3061 ctctcattta gtagaaacta gccaagttgg ttggaaacga tactttgaaa ttcatccaca 3121 agtaggggaa atttgggcca tctacaataa ttgggcacct ggttgggttc cttccagcaa 3181 ggatactttc gagtacacaa ttggtgaaat tactgactgc actgaagcta gcacaaaagt 3241 cttacttttg acccgagtag atggctacag agctgtgttc aagcctgaca gtgtaagggg 3301 cactctggag atacctacaa atgaaaacat aaggttttct cacctgatac cttctttccg 3361 gctgacaaaa gaaaacggtg gcaaactctg tggcttttat gagctggatc cagcttctgt 3421 tcctgatact ttcctgttcc ggagcggccg ctgattggca aatgttgatg ctgactgtcc 3481 tggagatagt aaggatctgg tctcttgtat gctcttctag tagggtgttc atacaccacg 3541 cagctgtggt gcaaaccaaa ccatgctatc ttttctaatg ttgaggcctc tgtgctcatt 3601 cagttagtta ttaggttaaa attgcatgtt gcattggcat ttggcatgtg atgcagtgat 3661 tatctggttg tcaatttctc ttgaggcgtt gccctgagag caaatgggaa atgtcatgca 3721 tactgcaatt tttctggagc caagcttctt ttctggccag tggtgtcatg ggcctgtgct 3781 caaagaagta ttgcaacctg taacatatag gttgcttctt gctgtgcttt aatatatttg 3841 tgccctttca tttggtagg //