LOCUS AK102511 1575 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033095I08, full insert
sequence.
ACCESSION AK102511
VERSION AK102511.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 1575)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..1575
/clone="J033095I08"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
CDS 382..1440
/db_xref="Osa1:LOC_Os09g32260"
/db_xref="RAP-DB:Os09g0497900"
/note="(RAP Annotation release2) No apical meristem (NAM)
protein domain containing protein"
/note="(Rice Genome Annotation Project) ANAC079/ANAC080,
putative, expressed"
/note="mapping to R09-TIGRv4S1-000603R (Chr.9: short
arm=19252876, long arm=19255544, direction=reverse) for
TIGR Pseudomol ver4"
/protein_id="BAG95589.1"
/translation="MAMGMEGSGGGGSAKKKEESLPPGFRFHPTDEELITYYLRQKIA
DGGFTARAIAEVDLNKCEPWDLPEKAKMGEKEWYFFSLRDRKYPTGVRTNRATNAGYW
KTTGKDKEIFTGQPPATPELVGMKKTLVFYKGRAPRGEKTNWVMHEYRLHSKSIPKSN
KDEWVVCRIFAKTAGVKKYPSNNAHSRSHHPYTLDMVPPLLPALLQQDPFGRGHHPYM
NPVDMAELSRFARGTPGLHPHIQPHPGYINPAAPFTLSGLNLNLGSSPAMPPPPPPPP
QSILQAMSMPMNQPRSTTNQVMVTEQMIPGLANGVIPQGTDGGFTTDVVVGGTGIRYQ
NLDVEQLVERYWPGSYQM"
BASE COUNT 411 a 392 c 382 g 390 t
ORIGIN
1 gaattaatcc gatcaaaatt aaagcccaaa agttgagata gctagctagc tcatcaggag
61 agagtgagag acagtatcca gcttgctagg tagctagctg ccgtttgcgt gttcttcttt
121 aatttcttcg tcgcataatc tgtctcgtct ctgataaact ttttatcttc tttttttggg
181 tggtcatgca tgctgcggcc aattcgttct tgaattcgtt agctactcca ttccatatat
241 agattcgatc ttgtcctagc tagataccta gctgctgctg ctgcttcttc ttcttccttg
301 gtgttgaatt tggttcagcc gctgctagct atagctttgc gcggtgttcg tagggttagg
361 gtttttgctg tgtgttcgac gatggctatg ggaatggaag gatcgggagg aggagggtcg
421 gcgaagaaga aagaggagag cttgccgccg gggttcaggt tccacccgac ggacgaggag
481 ctcatcacct actacctgcg gcagaagatc gccgacggcg gcttcacggc gagggccatc
541 gccgaggtcg atctcaacaa gtgcgagcca tgggatctcc cagagaaggc aaaaatggga
601 gagaaggaat ggtacttctt tagcctaagg gatcgaaagt acccaactgg cgtgcgcaca
661 aaccgagcaa ctaatgctgg ttattggaaa acaacgggaa aggataagga aatcttcact
721 ggacaaccac cagcaacacc ggagttagtt ggaatgaaga aaaccctagt gttctacaaa
781 ggaagggctc caagaggtga gaaaaccaat tgggtcatgc atgagtaccg actccactcc
841 aaatcaatcc ccaaatcaaa caaggatgag tgggtcgtct gtcgcatatt tgccaagact
901 gccggcgtca agaaataccc ctccaacaat gctcattccc gatcccacca cccatacaca
961 ctagacatgg tcccacctct cctcccagct ctattgcaac aagacccatt tggtcgtgga
1021 caccaccctt acatgaaccc cgttgacatg gcggaactct cccggtttgc tagaggtacg
1081 ccggggttgc acccacacat ccaaccacac cccggttaca tcaacccggc tgcgcctttt
1141 acactatcag gccttaacct caaccttgga tcctcgccag ccatgcctcc accaccacca
1201 ccgccaccac aatccatcct ccaagcgatg tcgatgccga tgaaccaacc aagaagtact
1261 acaaaccagg ttatggtaac agagcaaatg attccaggac tagccaatgg tgtcatccca
1321 cagggaacag atggaggttt taccacggat gttgttgttg gaggcactgg catcagatac
1381 cagaatttgg atgtagagca gctggtggag aggtactggc ctggtagtta ccaaatgtag
1441 tcctgaagga aatgcttggg gtactgccaa gcaattgttg gtctattatg taggaagaca
1501 taattatttg agctacctta atttagtcta tggatattgt atgattactt agctaatgtt
1561 gtacccttgc ttttt
//