LOCUS AK102474 2246 bp mRNA linear PLN 04-DEC-2008
DEFINITION Oryza sativa Japonica Group cDNA clone:J033094H16, full insert
sequence.
ACCESSION AK102474
VERSION AK102474.1
KEYWORDS CAP trapper; FLI_CDNA.
SOURCE Oryza sativa Japonica Group (Japanese rice)
ORGANISM Oryza sativa Japonica Group
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP
clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa.
REFERENCE 1 (bases 1 to 2246)
AUTHORS Adachi,J., Aizawa,K., Akimura,T., Arakawa,T., Carninci,P., Doi,K.,
Fujimura,T., Fukuda,S., Hanagaki,T., Hara,A., Hashizume,W.,
Hayashida,K., Hayashizaki,Y., Hayatsu,N., Hiramoto,K., Hiraoka,T.,
Hori,F., Hotta,I., Iida,J., Iida,Y., Ikeda,R., Imamura,K.,
Imotani,K., Ishibiki,J., Ishii,Y., Ishikawa,M., Itoh,M.,
Kagawa,I., Kanagawa,S., Katoh,H., Kawagashira,N., Kawai,J.,
Kawamata,M., Kikuchi,S., Kishikawa-Hirozane,T., Kishimoto,N.,
Kobayashi,M., Kodama,T., Kojima,K., Kojima,Y., Kondo,S., Konno,H.,
Kouda,M., Koya,S., Kurihara,C., Kurosaki,T., Kusumegi,T., Li,C.,
Lu,M., Masuda,H., Matsubara,K., Matsuyama,T., Miura,J.,
Miyazaki,A., Mizuno,K., Murakami,K., Murata,M., Nagata,T.,
Nakamura,M., Namiki,T., Narikawa,R., Niikura,J., Nishi,K.,
Nomura,K., Numasaki,R., Ohneda,E., Ohno,M., Ohtsuki,K., Oka,M.,
Ooka,H., Osato,N., Ota,Y., Otomo,Y., Ryu,R., Saitoh,H., Sakai,C.,
Sakai,K., Sakazume,N., Sano,H., Sasaki,D., Sato,K., Satoh,K.,
Shibata,K., Shinagawa,A., Shiraki,T., Shishiki,T., Sogabe,Y.,
Sugano,S., Sugiyama,A., Suzuki,K., Suzuki,Y., Tagami,M.,
Tagami-Takeda,Y., Tagawa,A., Takahashi,F., Takaku-Akahira,S.,
Tanaka,T., Tomaru,A., Toya,T., Tsunoda,Y., Ueda,M., Waki,K.,
Xie,Q., Yahagi,W., Yamada,H., Yamamoto,M., Yasunishi,A.,
Yazaki,J., Yokomizo,S. and Yoshimura,A.
TITLE Direct Submission
JOURNAL Submitted (27-AUG-2002) to the DDBJ/EMBL/GenBank databases.
Contact:Shoshi Kikuchi
National Institute of Agrobiological Sciences, Department of
Molecular Genetics, Head of Laboratory of Gene Expression; 2-1-2
Kannondai, Tsukuba, Ibaraki 305-8602, Japan
REFERENCE 2
AUTHORS The Rice Full-Length cDNA Consortium, National Institute of
Agrobiological Sciences Rice Full-Length cDNA Project Team:,
Kikuchi,S., Satoh,K., Nagata,T., Kawagashira,N., Doi,K.,
Kishimoto,N., Yazaki,J., Ishikawa,M., Yamada,H., Ooka,H.,
Hotta,I., Kojima,K., Namiki,T., Ohneda,E., Yahagi,W., Suzuki,K.,
Li,C., Ohtsuki,K., Shishiki,T., Foundation of Advancement of
International Science Genome Sequencing & Analysis Group:,
Otomo,Y., Murakami,K., Iida,Y., Sugano,S., Fujimura,T., Suzuki,Y.,
Tsunoda,Y., Kurosaki,T., Kodama,T., Masuda,H., Kobayashi,M.,
Xie,Q., Lu,M., Narikawa,R., Sugiyama,A., Mizuno,K., Yokomizo,S.,
Niikura,J., Ikeda,R., Ishibiki,J., Kawamata,M., Yoshimura,A.,
Miura,J., Kusumegi,T., Oka,M., Ryu,R., Ueda,M., Matsubara,K.,
RIKEN:, Kawai,J., Carninci,P., Adachi,J., Aizawa,K., Arakawa,T.,
Fukuda,S., Hara,A., Hashidume,W., Hayatsu,N., Imotani,K.,
Ishii,Y., Itoh,M., Kagawa,I., Kondo,S., Konno,H., Miyazaki,A.,
Osato,N., Ota,Y., Saito,R., Sasaki,D., Sato,K., Shibata,K.,
Shinagawa,A., Shiraki,T., Yoshino,M. and Hayashizaki,Y.
TITLE Collection, Mapping, and Annotation of Over 28,000 cDNA Clones
from japonica Rice
JOURNAL Science 301, 376-379 (2003)
COMMENT This clone is one of the 28K full-length cDNA clones from japonica
rice.
URL : http://cdna01.dna.affrc.go.jp/cDNA/
NIAS Rice Full-Length cDNA Project Team: Kikuchi,S., Satoh,K.,
Nagata,T., Kawagashira,N., Doi,K., Kishimoto,N., Yazaki,J.,
Ishikawa,M., Yamada,H., Ooka,H., Hotta,I., Kojima,K., Namiki,T.,
Ohneda,E., Yahagi,W., Suzuki,K., Li,C., Ohtsuki,K., Shishiki,T.
and Yamamoto,M.
FAIS Genome Sequencing & Analysis Group: Otomo,Y., Iida,Y.,
Fujimura,T., Ikeda,R., Ishibiki,J., Kawamata,M., Kobayashi,M.,
Kodama,T., Kurosaki,T., Kusumegi,T., Lu,M., Masuda,H., Miura,J.,
Mizuno,K., Narikawa,R., Niikura,J., Oka,M., Ryu,R., Sugano,S.,
Sugiyama,A., Suzuki,Y., Tsunoda,Y., Ueda,M., Xie,Q., Yokomizo,S.,
Yoshimura,A., Matsubara,K. and Murakami,K.
Genome Exploration Research Group in Riken Genomic Sciences Center
and Genome Science Laboratory in Riken: Adachi,J., Aizawa,K.,
Akimura,T., Arakawa,T., Carninci,P., Fukuda,S., Hanagaki,T.,
Hara,A., Hashizume,W., Hayashida,K., Hayatsu,N., Hiramoto,K.,
Hiraoka,T., Hori,F., Iida,J., Imamura,K., Imotani,K., Ishii,Y.,
Itoh,M., Kagawa,I., Kanagawa,S., Katoh,H., Kawai,J.,
Kishikawa-Hirozane,T., Kojima,Y., Kondo,S., Konno,H., Kouda,M.,
Koya,S., Kurihara,C., Matsuyama,T., Miyazaki,A., Murata,M.,
Nakamura,M., Nishi,K., Nomura,K., Numasaki,R., Ohno,M., Osato,N.,
Ota,Y., Saitoh,H., Sakai,C., Sakai,K., Sakazume,N., Sano,H.,
Sasaki,D., Sato,K., Shibata,K., Shinagawa,A., Shiraki,T.,
Sogabe,Y., Tagami,M., Tagami-Takeda,Y., Tagawa,A., Takahashi,F.,
Takaku-Akahira,S., Tanaka,T., Tomaru,A., Toya,T., Waki,K.,
Yasunishi,A. and Hayashizaki,Y.
FEATURES Location/Qualifiers
source 1..2246
/clone="J033094H16"
/cultivar="Nipponbare"
/db_xref="taxon:39947"
/mol_type="mRNA"
/organism="Oryza sativa Japonica Group"
misc_feature 1..2246
/db_xref="Osa1:LOC_Os05g30870"
/note="(Rice Genome Annotation Project)
serine/threonine-protein kinase NAK, putative, expressed"
/note="mapping to R05-TIGRv4S1-000563F (Chr.5: short
arm=17841846, long arm=17849116, direction=forward) for
TIGR Pseudomol ver4"
BASE COUNT 531 a 497 c 597 g 621 t
ORIGIN
1 gggatttcga gaccccccag atcgggggga gagatccccg tgtcgtctgg tgtggtgggt
61 cggcctccgc cccccggccg ccgcgcttct cttgatcttt ctttcttttt tttgattttt
121 ttgcgtttcc cctccgggag aggggagggg aggagggttc ttggatgggc tgctttccgt
181 gcttcgggtc gggcggcaag gggggggcga agaagggcgg cggcgggcgc aaggacggcg
241 gctcggcgga tcgccgcgtc gcccgggtcg gatcagataa atcaaaatca cagggtggat
301 tggactctag gaaggatgca ttcatcccaa gggatgcgaa tggtcaacct attgctgcac
361 acactttcac ttttcgtgaa cttgctgctg ccactaagaa cttcagacaa gattgtctat
421 tgggggaggg aggttttggc cgcgtatata aaggacactt ggagaatggg caggctgttg
481 cagtgaagca acttgatcgc aatggacttc aaggaaatag agagtttctg gttgaagtcc
541 ttatgctcag tctattgcac catgataacc tggttaacct aattggatac tgtgctgatg
601 gggatcaacg tctccttgta tatgagttta tgccattggg atcacttgag gatcatttgc
661 atgatattcc acctgacaag gaacctctcg actggaatac acggatgaag attgctgctg
721 gtgcagccaa gggcttggaa ttcttgcatg acaaggcaaa tcctcctgtt atttacaggg
781 atttcaagtc atcgaacatt cttcttggtg agggatacca tccaaaacta tcagactttg
841 gcctggcaaa acttggccct gttggtgaca aaactcatgt ttcgacacgt gttatgggaa
901 cttatggcta ctgtgcccca gaatatgcga tgactgggca gcttactgtt aaatctgatg
961 tgtatagttt tggtgttgtg ttccttgaac tgattactgg ccgcaaagta atcgacaaca
1021 ccaaaccact tggagagcag aacctagtgg catgggcccg tcccctgttt aaagaccgca
1081 ggaaatttcc taaaatggct gatccattac ttgcgggccg atttcctatg cggggcctgt
1141 atcaggcttt agcagttgct gcaatgtgtt tgcaggagca agctgccact aggcctttta
1201 taggagatgt ggtcactgct ctttcatatc ttgcttccca gacatatgat ccaaatacac
1261 ctgttcagca cagtcggagc aatgcatcta cccctagggc cagaaaccgt gttggtgcga
1321 attttgacca gcgtcgtctt cactcaccaa atcaccaaca atctccagat ttaaggaaag
1381 aaggcaccac aacatcaaaa tatgaagctg aggttagcag gactaattct ggcagtggct
1441 ctggtcgacg agctggcttg gacagcatgg atgtgacagg ttcacagatg ggtagtcctg
1501 ctcacgcagg aaggaagagg gaatcatcgc ggagtactga taggcagcgt gcagtcgcag
1561 aggccaaaac atggggggag aattcaagag aaagaaagtg gccaaatgct cgtggcagct
1621 ttgatagtac aaatgagtaa acctctgaag cagaaggttc agttaagtcg tcattctagg
1681 ggaaaaaaaa agatgaatca cttgcagaac ccaactgggt cgaattaggt acatggggca
1741 ttttcgctcc atctcggctc tgcggtctat gtgaatagag cttctctttt tcttttttct
1801 gtcctggaga caccaccgct gcttcagagc tctcctctcg tccatacgaa tagcatcacc
1861 gcgatctcat cgtcgacgcg cctattcctg gcgtccattc ctcgtgattg atcatgcaaa
1921 tgtgcctttt attcatcatg aagacagaaa caccgtttgg ctggaaatgt aggtagaaag
1981 caaaagagaa aatttgctct ggagctatcc attgggtatc tcatgtcgat gttgttgcat
2041 gatgagtgtc agcggctgca ccattgttcc tgagtgttct agctctatgt gaagtgaagt
2101 ctgcgtaccg agggatgtga tgttcttttt tcttttcttt tcttttcttt ttgtctcaat
2161 ggtttgtacc tagggggtac ggcattttac ctgtgtttca tacacctgtc atttgacaat
2221 ttcatgtcgg agttatctgt tgtttc
//